Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J04
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845...    30   2.4  
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19...    29   4.1  
12_01_0768 + 6975005-6975490                                           29   5.4  
02_05_0460 - 29224525-29224620,29225525-29226625                       28   7.2  
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687...    28   9.5  
02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569           28   9.5  

>10_06_0143 - 11183574-11183761,11183989-11184344,11184437-11184592,
            11184825-11184994,11185906-11186064,11186856-11187164,
            11187281-11187576,11187825-11188174,11188279-11188434,
            11188634-11188803,11189289-11189447,11190702-11191010,
            11191172-11191458,11191911-11192263,11192366-11192521,
            11192680-11192849,11195800-11195958,11196937-11197254,
            11197658-11197786
          Length = 1449

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
 Frame = -3

Query: 521  RLLALGDWLQINGEAIYSSSPWEYQNDTLNGKVWYTCSINRSNSMKRTYRSGQ-VTAIYA 345
            R + LG WL   G  + S       ND L+G   +  S+ +   +      GQ + A   
Sbjct: 976  RSVNLGGWLVTEGWILPSLFDGIPNNDLLDGTTLHIKSVIQDKYLAAEQGGGQTIVANRV 1035

Query: 344  ILLEWPSDNRLSVRSITNSLRSRYNQLEMLGNEGTYLNWKITNG 213
            +  +W S     V   T +LR    Q   + + GT +    T G
Sbjct: 1036 VASDWESFTLWRVDETTFNLRVFKKQFMGIDSNGTVIATATTPG 1079


>06_01_0018 +
           194295-194640,194679-194917,195737-195885,196248-196342,
           196685-196780,197248-197399,198683-198823,199068-199319,
           199463-199603,199686-200003,200146-200232,201025-202006,
           202091-202179,202968-203072,203155-204306,204844-205359,
           205455-205650,206299-207182
          Length = 1979

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -1

Query: 454 SIKTTL*MAKFGTLVRLIEAIV*NVHTAVDK*LQSTLFYSNGLAT 320
           S   +L  AKF  L   I  +V N    V K +Q   FY NGL T
Sbjct: 433 SASLSLWEAKFNRLAPSINVVVYNGEKDVRKQIQDLEFYENGLVT 477


>12_01_0768 + 6975005-6975490
          Length = 161

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 97  LSELHNNMLLSISYVVASLRTQA*FDFTVALSGSSISTSPFVI 225
           +SELH    LSISYV++ L     F       G S     FVI
Sbjct: 83  ISELHYGFDLSISYVLSELEENREFQLFRGAIGESCGLRRFVI 125


>02_05_0460 - 29224525-29224620,29225525-29226625
          Length = 398

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 496 SQSPSAKSRSSNIGAIVPSLVGPTFMSAFPPQLTV 600
           S SPSA    +N   ++P L+ P  M   PP L V
Sbjct: 237 SLSPSATPTGANSSRLMPLLLAPPHMQKRPPVLPV 271


>09_06_0252 +
           21867179-21867283,21868362-21868526,21868621-21868730,
           21868802-21868904,21868998-21869110,21869204-21869357,
           21869476-21870633
          Length = 635

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 281 SRYNQLEMLGNEGTYLNWKITNGDV 207
           SRYNQLE          WK+ +GDV
Sbjct: 303 SRYNQLETQEEAQEETGWKLVHGDV 327


>02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569
          Length = 272

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -3

Query: 338 LEWPSDNRLSVRSITNSLRSRYNQ--LEMLG-NEGTYLNWKITNGDVEIELPDR 186
           L W  +N  +V  ++N+   RY    L  LG NEG+  ++ + +G V +E PDR
Sbjct: 123 LRWLRNNGCTVGIVSNA-EYRYKDVVLPALGLNEGSEWDFGVFSGIVGVEKPDR 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,613,467
Number of Sequences: 37544
Number of extensions: 399311
Number of successful extensions: 906
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)