Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_J04
(778 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28) 140 2e-33
SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 5e-31
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 118 5e-27
SB_37971| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-20) 105 4e-23
SB_25534| Best HMM Match : Alpha_L_fucos (HMM E-Value=0.0015) 105 4e-23
SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 81 7e-16
SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16) 33 0.26
SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_42757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_47811| Best HMM Match : ig (HMM E-Value=5.2e-13) 28 7.3
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22) 28 7.3
SB_25364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
>SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28)
Length = 261
Score = 140 bits (338), Expect = 2e-33
Identities = 85/205 (41%), Positives = 118/205 (57%), Gaps = 7/205 (3%)
Frame = -3
Query: 740 SDRFNPGVLLHHKWX-TRSL*LRILGYRXEY--ANTRNIDD*RMLQQIVTTVSCGGNALI 570
SD++NPGVL HK+ ++ R GYR E ++ + ID+ +L+ +VT VSCGGN L+
Sbjct: 72 SDKYNPGVLQKHKFEDATTVDKRSWGYRREMKLSDVQTIDE--LLELMVTVVSCGGNFLL 129
Query: 569 NVGPTKEGTIAPIFEERLLALGDWLQINGEAIYSSSPWEYQNDTLNGKVWYTCSINRSNS 390
N+GPTKEGTI IFEERLL +G WL +NGEAIY + PW QNDT N +WYT
Sbjct: 130 NIGPTKEGTIPTIFEERLLQIGAWLHVNGEAIYDTVPWRVQNDTANVPLWYT-------- 181
Query: 389 MKRTYRSGQVTAIYAILLEWPSDNRLSVRSITNSLRSRYNQLEMLGNEGTYLNW--KITN 216
R+ +YAI LEWP+D L + S + + + +LG +G ++ W ++
Sbjct: 182 -----RNPDTNVVYAIALEWPTDPYLKLAS---PITTDATIVTLLGYKGEFV-WESELYQ 232
Query: 215 GDVEIELP--DRATVKSNHAWVLKL 147
V I LP + + AWV KL
Sbjct: 233 PGVIINLPYIPASALPCQWAWVFKL 257
>SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 131 bits (317), Expect = 5e-31
Identities = 82/199 (41%), Positives = 113/199 (56%), Gaps = 7/199 (3%)
Frame = -3
Query: 722 GVLLHHKWX-TRSL*LRILGYRXEY--ANTRNIDD*RMLQQIVTTVSCGGNALINVGPTK 552
GVL HK+ ++ R GYR E ++ + ID+ +L+ +VT VSCGGN L+N+GPTK
Sbjct: 166 GVLQKHKFEDATTVDKRSWGYRREMKLSDVQTIDE--LLELMVTVVSCGGNFLLNIGPTK 223
Query: 551 EGTIAPIFEERLLALGDWLQINGEAIYSSSPWEYQNDTLNGKVWYTCSINRSNSMKRTYR 372
EGTI IFEERLL +G WL +NGEAIY + PW QNDT N +WYT R
Sbjct: 224 EGTIPTIFEERLLQIGAWLHVNGEAIYDTVPWRVQNDTANVPLWYT-------------R 270
Query: 371 SGQVTAIYAILLEWPSDNRLSVRSITNSLRSRYNQLEMLGNEGTYLNWKITN--GDVEIE 198
+ +YAI LEWP+D L + S + + + +LGN+G ++ W+ + V I
Sbjct: 271 NPDTNVVYAIALEWPTDPYLKLAS---PITTDATIVTLLGNQGEFV-WESESYQPGVIIN 326
Query: 197 LP--DRATVKSNHAWVLKL 147
LP + + AWV KL
Sbjct: 327 LPYIPASALPCQWAWVFKL 345
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 118 bits (284), Expect = 5e-27
Identities = 53/104 (50%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Frame = -3
Query: 740 SDRFNPGVLLHHKWXTR-SL*LRILGYRXEYANTRNIDD*RMLQQIVTTVSCGGNALINV 564
+D +NPGVL HKW S+ R GYR ++ Q+VTTVSCGGN L+NV
Sbjct: 267 ADHYNPGVLQKHKWENAMSIDKRSWGYRRNATIDEYYTTKELVSQLVTTVSCGGNLLLNV 326
Query: 563 GPTKEGTIAPIFEERLLALGDWLQINGEAIYSSSPWEYQNDTLN 432
GPT +G + P+FEERLL +G+WL +NG+AIY + PW QNDT N
Sbjct: 327 GPTADGRVIPVFEERLLQMGEWLDVNGQAIYDTKPWRAQNDTGN 370
>SB_37971| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-20)
Length = 466
Score = 105 bits (252), Expect = 4e-23
Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = -3
Query: 716 LLHHKWXTR-SL*LRILGYRXEYANTRNIDD*RMLQQIVTTVSCGGNALINVGPTKEGTI 540
LL HKW S+ GYR ++ +++ T+SCGGN L+NVGPT +G I
Sbjct: 3 LLKHKWENAMSVDKGSWGYRRNAGINDYFTIEELIAKLMATISCGGNMLMNVGPTADGRI 62
Query: 539 APIFEERLLALGDWLQINGEAIYSSSPWEYQNDTLNGKVWYTCS 408
API +ER+L +G WL +NGEA+Y + PW QNDT+ VWY C+
Sbjct: 63 APIHQERMLQMGKWLAVNGEAVYETKPWRSQNDTVAKNVWYLCT 106
>SB_25534| Best HMM Match : Alpha_L_fucos (HMM E-Value=0.0015)
Length = 112
Score = 105 bits (252), Expect = 4e-23
Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = -3
Query: 716 LLHHKWXTR-SL*LRILGYRXEYANTRNIDD*RMLQQIVTTVSCGGNALINVGPTKEGTI 540
LL HKW S+ GYR ++ +++ T+SCGGN L+NVGPT +G I
Sbjct: 3 LLKHKWENAMSVDKGSWGYRRNAGINDYFTIEELIAKLMATISCGGNMLMNVGPTADGRI 62
Query: 539 APIFEERLLALGDWLQINGEAIYSSSPWEYQNDTLNGKVWYTCS 408
API +ER+L +G WL +NGEA+Y + PW QNDT+ VWY C+
Sbjct: 63 APIHQERMLQMGKWLAVNGEAVYETKPWRSQNDTVAKNVWYLCT 106
>SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 413
Score = 81.4 bits (192), Expect = 7e-16
Identities = 31/52 (59%), Positives = 41/52 (78%)
Frame = -3
Query: 593 SCGGNALINVGPTKEGTIAPIFEERLLALGDWLQINGEAIYSSSPWEYQNDT 438
SCGGN L+NVGPT +G I P+F+ERL+ +G WL +NGEAIY ++PW QN +
Sbjct: 318 SCGGNLLMNVGPTADGRILPVFQERLIQIGQWLGVNGEAIYDTTPWRVQNSS 369
>SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)
Length = 476
Score = 33.1 bits (72), Expect = 0.26
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = -3
Query: 428 KVWYTCSINRSNSMKRTYRSGQVTAIYAILLEWPSDNRLSVRSITNSLRSRYNQLEMLGN 249
KV Y + S + T + G V YAI+LEWP+ L + + S + L + G
Sbjct: 259 KVVYALEESMSIRVWYTTKDGYV---YAIVLEWPTSGTLLLGAPVPSQNTTVTMLGLTGE 315
Query: 248 EGTYLNWKITNGDVEI 201
Y+++ NG EI
Sbjct: 316 FSWYVHYDKINGAEEI 331
>SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1580
Score = 29.9 bits (64), Expect = 2.4
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Frame = -3
Query: 650 ANTRNIDD*RMLQQIVTTVSCGGNALINVGPTKEGTIAPIFEERLLALGDWLQINGEAI- 474
A +RN D L ++ SC + PTK + I E+RLL L D LQ NG A+
Sbjct: 1139 ARSRNNDSSSWLT-CMSNDSCDNETTLKQPPTKIPVFSEIPEQRLLKLAD-LQ-NGPALP 1195
Query: 473 ------YSSSPWEYQNDTLNGKVWYTCSINRSNSMKRTYR 372
S S + ++ + W TC N S + T +
Sbjct: 1196 LPSRKPQSRSRYSARSRNNDSSSWLTCMSNDSCDNETTLK 1235
>SB_42757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 490 IWSQSPSAKSRSSNIGAIVPSLVGPTFMSAFPPQLTV---VTICWSILQSSIFR 642
IW P K+ S+NIG P LV +F ++ + T+ + +C + +IF+
Sbjct: 280 IWCNQPFNKNVSTNIGREFPKLVDKSFPASSTLKKTLRLAIDVCQMLASVTIFQ 333
>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -3
Query: 305 RSITNSLRSRYNQLEMLGNEGTYLNWKITNGDVEIELPDRATVKSNHAWVLKLATT 138
R+ L + NQL G +GTY +K+ + +EL D V WV ++ T
Sbjct: 423 RTGVTQLVTHQNQLYSTGRDGTYRQYKV--HESRLELTDTKKVFKGVEWVERIQFT 476
>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 28.7 bits (61), Expect = 5.5
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Frame = -3
Query: 554 KEGTIAPIFEERL------LALGDWLQINGEAIYSSSPWE-YQNDT--LNGK-VWYT--C 411
K G IAPIF ERL L +G W + S+P Y N T L G+ WY
Sbjct: 5 KTGNIAPIFRERLKSITEVLPVGTWQNLGDATGSPSTPAALYSNPTSLLTGRDQWYVRDA 64
Query: 410 SINRSNSMKRTYRSGQVTAI 351
++ S ++ Y S ++ I
Sbjct: 65 CVSPSENISTNYGSPKLPRI 84
>SB_47811| Best HMM Match : ig (HMM E-Value=5.2e-13)
Length = 278
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -3
Query: 488 NGEAIYSSSPWEYQNDTLNGKVWYTCSINRSNSMKRTYRSGQVTAIY 348
NG + ++ + + T YTC++N N R+ +T IY
Sbjct: 65 NGSVLTNTGSYTFSPITRRDGGTYTCTVNNGNECPAYTRTTSITVIY 111
>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
Length = 1123
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/47 (23%), Positives = 21/47 (44%)
Frame = -3
Query: 488 NGEAIYSSSPWEYQNDTLNGKVWYTCSINRSNSMKRTYRSGQVTAIY 348
NG + +S + + + T + YTC++N N + +T Y
Sbjct: 58 NGSVLTNSGSYTFSHITRRDEGTYTCTVNNGNECSNDTNTTNITVNY 104
>SB_25364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +1
Query: 367 PLRYVRFXXXXXXXEQVYQTLPF---RVSF*YSHGEELYMASPFIWSQSPSAKSRSSNIG 537
P Y R +Y+ P R S Y +Y +P I+ ++PS R+S+I
Sbjct: 39 PSIYERTSSIYERTSSIYERTPSIYERTSSIYERTSSIYERTPSIYERTPSIYERTSSIY 98
Query: 538 AIVPSL 555
PS+
Sbjct: 99 ERTPSI 104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,279,724
Number of Sequences: 59808
Number of extensions: 492304
Number of successful extensions: 1204
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -