Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J04
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 390 TIASINRTSVPNFAI*SVVLILPRRG 467
           T+ASI   S+P+ A+ +++++L   G
Sbjct: 432 TLASIGAASIPSAALITMLIVLTALG 457


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 239 YLNWKITNGDVEI 201
           YL W  +NGD+++
Sbjct: 810 YLTWYSSNGDIKV 822


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 295 VILRTDSLLSLGHSSKIA*IAVTCPLRYVR 384
           ++L T S+LSL   S    +AVT PL Y R
Sbjct: 119 ILLCTASILSLCAISIDRYLAVTQPLIYSR 148


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 162 LGPQTRDHITDGQQHIVVKF*QSISP 85
           +GP  R H+T+  Q+  +   + +SP
Sbjct: 652 MGPSERVHVTNMDQYNSILMIEHLSP 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,762
Number of Sequences: 438
Number of extensions: 4386
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)