Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J03
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    60   5e-10
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    30   0.44 
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    29   0.78 
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    28   1.4  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    28   1.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.1  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   5.5  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
 Frame = -2

Query: 654 LSTQA*TMVKISAVQSTQKVSDKLDCGVSMKWTAGS-ADTL-FGVGAKYALDQDASLHAK 481
           ++ QA   + +       +VS  ++ G ++ W A S A+ +   + +KYALD+D  +  K
Sbjct: 176 VALQASNNLSVFRASYYHRVSSDVEAGGNVTWDAASTANAITLELASKYALDKDTFVKGK 235

Query: 480 INNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVAL 352
           IN+  +  L Y Q +RPGVT+ L   +D Q      HK G++L
Sbjct: 236 INSAGVATLSYFQTVRPGVTVGLGLQLDTQRLGQPAHKAGLSL 278


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 560 GRRVRPTHYSELERSTRWTKTRLCTPRSTTSP 465
           G  V+PT  SE+++ T W K  L  P ST+SP
Sbjct: 45  GLLVKPTMLSEVQKPTLWEK--LTKPASTSSP 74


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 682 CSRYQSGDFALHTSVDNGKDFGXSIYPEGI 593
           C+R Q G+ A HT V NG  +   I P G+
Sbjct: 43  CARCQGGNNAGHTIVANGVTYDFHILPSGL 72


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -1

Query: 454 WLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITKPTLVDKYILLSQPNS 278
           W    T PR       C + T+++ + PQ    P T  L    K   +D +  L  PNS
Sbjct: 145 WEGNLTNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNS 203


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 479 ILACRDASWSSAYFAPTPNNV--SAEPAVHFMLTPQSSLSDTFWVD*TAEIFTIVYA 643
           +  C+D   +S  F P P+N+   A+  V ++  P  S+ D    D TA  F +V++
Sbjct: 521 LATCKDVVCASDAFFPFPDNIYRLAQSGVKYVAAPGGSVMDQAVRD-TANEFNMVFS 576


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -3

Query: 488 TPRSTTSPSSVLVT-NRNYAQA*PLHCLLPSMDRTSMQVA-TRLALPSNSSPRKYNQTY 318
           +PR+T +PS+   + N N   +   +    +   T + +A ++ +LPSNS+P K N ++
Sbjct: 263 SPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSF 321


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 688  TTCSRYQSGDFALHTSVDNGKD 623
            T C R Q  DFAL  S+D  K+
Sbjct: 981  TLCERSQEKDFALRPSIDEVKE 1002


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,084
Number of Sequences: 5004
Number of extensions: 68800
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)