Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J03
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical...    30   1.7  
AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical...    30   1.7  
Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    29   5.2  
U88315-2|AAB42370.2|  434|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U88315-1|AAM29668.1|  457|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical ...    28   9.0  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 26/87 (29%), Positives = 44/87 (50%)
 Frame = -2

Query: 600 KVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVT 421
           KV+  ++ G  + W  G     + +  KYA  +D ++ AK+N+ S + +     L P + 
Sbjct: 197 KVASNVEVGTQLGWKVGGNGADYALATKYAPSRDLTVRAKVNSSSQVAVAATHSLSPALK 256

Query: 420 LTLSAAIDGQNFNAGGHKVGVALELEP 340
           LTLS   +    +A  HK G+ LE +P
Sbjct: 257 LTLSTQFNLAANDA--HKFGLGLEFDP 281



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 745 GWLAGYTPSLIHKKQSSPRTTCS-RYQSGDFALHTSVDNGKDFGXSIY 605
           GWL G   +          T+ +  + +  + LH+ V N  DFG S+Y
Sbjct: 148 GWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINSTDFGASLY 195


>AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3b protein.
          Length = 131

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -2

Query: 492 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 340
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 40  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 90


>AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3a protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -2

Query: 492 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 340
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 38  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 88


>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -3

Query: 515 TRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPR 336
           T+ ++TR  T  STT+      T+  +A   P     PS    ++  AT   LP+  S R
Sbjct: 238 TKPSRTRSLTSTSTTTAKLPTTTSTTFAA--PQASTEPSEATEALATATPADLPTKPSGR 295

Query: 335 KYNQTYSCR*IHTVVTTK 282
           +       R + +  TTK
Sbjct: 296 EITTITGTRKLSSTSTTK 313


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = -3

Query: 563 SGRRVRP---THYSELERSTRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMD 393
           SG R  P    HY  +  + + T    CTPR+TT+ ++   T      A P     P+  
Sbjct: 261 SGYRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTTTTTTTTT-----ALPPCVYTPAPP 315

Query: 392 RTSMQVATRLALPSNSSPRKYNQT 321
            T+       A P+  +PR Y+ T
Sbjct: 316 ATAPPAT---ATPATQTPRTYSTT 336


>U88315-2|AAB42370.2|  434|Caenorhabditis elegans Hypothetical
           protein C37H5.6b protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 679 SRYQSGDFALHTSVDNGKDFGXSIYPEGI 593
           +R Q G+ A HT V NG+ +   I P GI
Sbjct: 38  ARCQGGNNAGHTVVANGRKYDFHILPSGI 66


>U88315-1|AAM29668.1|  457|Caenorhabditis elegans Hypothetical
           protein C37H5.6a protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 679 SRYQSGDFALHTSVDNGKDFGXSIYPEGI 593
           +R Q G+ A HT V NG+ +   I P GI
Sbjct: 61  ARCQGGNNAGHTVVANGRKYDFHILPSGI 89


>AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical
           protein H24D24.1 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 304 YILLSQPNSVYRESISIVEITCIVPGAFKTQYSFPAF 194
           Y+LL+ P+  YR   SI+   CI P ++ + + F  F
Sbjct: 79  YVLLALPDYHYRYQKSIMSSICIPPPSYASCFLFVHF 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,953,324
Number of Sequences: 27780
Number of extensions: 392620
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)