Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J03
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15090.1 68418.m01768 porin, putative / voltage-dependent ani...    42   5e-04
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    38   0.008
At3g20000.1 68416.m02530 porin family protein low similarity to ...    36   0.024
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    34   0.097
At5g60630.1 68418.m07609 expressed protein predicted protein, Ar...    30   2.1  
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ...    28   6.3  
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c...    28   6.3  
At2g27770.1 68415.m03365 expressed protein                             28   6.3  
At1g05080.1 68414.m00510 F-box family protein contains F-box dom...    28   6.3  
At1g18860.1 68414.m02348 WRKY family transcription factor contai...    28   8.4  

>At5g15090.1 68418.m01768 porin, putative / voltage-dependent
           anion-selective channel protein, putative similar to
           SP|P42055 34 kDa outer mitochondrial membrane protein
           porin (Voltage-dependent anion-selective channel
           protein) (VDAC) {Solanum tuberosum}; contains Pfam
           profile PF01459: Eukaryotic porin; identical to cDNA
           voltage-dependent anion-selective channel protein
           GI:4006940
          Length = 274

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 25/88 (28%), Positives = 42/88 (47%)
 Frame = -2

Query: 603 QKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGV 424
           Q VS     G  +     + +    VG ++ALD   ++ A++NN  +     Q + RP  
Sbjct: 188 QIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKS 247

Query: 423 TLTLSAAIDGQNFNAGGHKVGVALELEP 340
             T+S  +D +  +    KVG+AL L+P
Sbjct: 248 FFTVSGEVDSKAIDKSA-KVGIALALKP 274


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = -2

Query: 528 VGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALE 349
           VG  YA+D   ++ AK+NN   +G   Q ++ P   +T+S+ ID +       + G++L 
Sbjct: 215 VGGLYAIDHSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSEIDTKALEK-HPRFGLSLA 273

Query: 348 LEP 340
           L+P
Sbjct: 274 LKP 276


>At3g20000.1 68416.m02530 porin family protein low similarity to
           haymaker protein [Mus musculus] GI:17834089,
           mitochondrial outer membrane protein MOM35 [Mus
           musculus] GI:6650562; contains Pfam profile PF01459:
           Eukaryotic porin
          Length = 309

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = -2

Query: 603 QKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGV 424
           QK+SDK+       +   S D    VG  Y L Q A +  KI++  +     +++L  G+
Sbjct: 227 QKISDKVSLATDFMYNYFSRDVTASVGYDYMLRQ-ARVRGKIDSNGVASALLEERLSMGL 285

Query: 423 TLTLSAAID 397
              LSA +D
Sbjct: 286 NFLLSAELD 294


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 34.3 bits (75), Expect = 0.097
 Identities = 20/68 (29%), Positives = 36/68 (52%)
 Frame = -2

Query: 543 DTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKV 364
           +T   VG  YA+D   ++ AK+N+    G   Q +  P   +T+S  ID +  +    ++
Sbjct: 160 ETTVTVGGLYAVDHLTNVKAKLNSNGKFGALLQHEGLPKSIVTISGEIDTKTLDK-YPRL 218

Query: 363 GVALELEP 340
           G++L L+P
Sbjct: 219 GLSLSLKP 226


>At5g60630.1 68418.m07609 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 139

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/105 (21%), Positives = 46/105 (43%)
 Frame = -2

Query: 666 LVTLLSTQA*TMVKISAVQSTQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLH 487
           +V L+      ++ +S   ST+++S  ++   S+      ++T        + D D    
Sbjct: 7   IVALVMVSGVALLMVSGEISTEEISPAIEHSSSLP----QSETEMSPSPTMSNDYDYPSS 62

Query: 486 AKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVAL 352
           +++   +   L Y    RPG      A++ G+N   GG K G+A+
Sbjct: 63  SQLTESN--DLNYTDSTRPGGE---EASVGGENGGGGGKKTGIAV 102


>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
           protein (ETT) identical to ETTIN GB:AF007788 from
           [Arabidopsis thaliana]
          Length = 608

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 500 TRLCTPRSTTSPSSVLVTNRN 438
           TR+  P  ++SPSSVL+TN N
Sbjct: 514 TRILPPSVSSSPSSVLLTNSN 534


>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 610

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 352 RTRALENITKPTLVDKYILLSQPNSVYRESISIVEIT 242
           RT+ LE  T  T  DKY+  S PN +    +++ +++
Sbjct: 207 RTKELERATGDTTKDKYLPKSSPNRLKAMEVALYKVS 243


>At2g27770.1 68415.m03365 expressed protein
          Length = 320

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 206 LSCFPKNAVRLFH*LFLNVCKQFASKYSLTRLLINKS 96
           +SCF +N++ + H L ++      SKYS   + I+ S
Sbjct: 5   VSCFSENSINVTHPLSISSSSSSCSKYSTNNVCISPS 41


>At1g05080.1 68414.m00510 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 439

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/48 (33%), Positives = 32/48 (66%)
 Frame = -1

Query: 334 NITKPTLVDKYILLSQPNSVYRESISIVEITCIVPGAFKTQYSFPAFL 191
           ++++ TL D+ IL++ P+S Y  S++ +E+ C+V   +K + S  +FL
Sbjct: 141 SLSELTLSDQ-ILVNVPSSAYLPSLTELELICVV---YKDEDSLVSFL 184


>At1g18860.1 68414.m02348 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 480

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 518 FAPTPNNVSAEPAVHFMLTPQSSLSDTFWVD*T 616
           F+ + NN++ +P  HF+ +P SS   T  +D T
Sbjct: 287 FSLSGNNITPKPKTHFLQSPSSSGHPTVTLDLT 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,779,678
Number of Sequences: 28952
Number of extensions: 359064
Number of successful extensions: 875
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)