Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J01
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3)                   28   7.2  
SB_34671| Best HMM Match : GDA1_CD39 (HMM E-Value=6.1e-37)             28   7.2  

>SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3)
          Length = 451

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 749 GMVGDDPAAYLTN-EAHDAPVGDEIASTAEPD 657
           G+  D P   ++  EA  AP+GD ++   EPD
Sbjct: 416 GLAADAPVRPVSEGEAESAPLGDRVSQAEEPD 447


>SB_34671| Best HMM Match : GDA1_CD39 (HMM E-Value=6.1e-37)
          Length = 400

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 625 MPLAWTECSVASGSAVDAISSPTGAS*ASLVRYAAGSSPT 744
           M + W  C +A G  +D +S+ T ++    V + AGSS T
Sbjct: 1   MKVTWLACLLALGLTLDLVSARTISTVKYAVMFDAGSSGT 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,299,173
Number of Sequences: 59808
Number of extensions: 309462
Number of successful extensions: 490
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)