Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I24
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078           32   0.67 
04_03_0997 - 21548158-21548377,21548482-21548523,21548646-215487...    29   6.2  
02_02_0426 - 10087547-10089054,10090744-10090762                       28   8.2  

>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
          Length = 455

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +2

Query: 197 SSAVYSTLRTEPSASSKVYSPCTASPSRDSCWDL 298
           +S+V    R++PS+ S + SPC ASP RD+ ++L
Sbjct: 389 ASSVGPLFRSQPSSDS-LQSPCKASPCRDASFEL 421


>04_03_0997 -
           21548158-21548377,21548482-21548523,21548646-21548722,
           21548798-21548914,21549149-21549252,21549330-21549399,
           21549489-21549598,21549845-21549932,21550006-21550096,
           21550176-21550268,21550362-21550687,21550922-21551290,
           21551934-21552020
          Length = 597

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 221 RTEPSASSKVYSPCTASPSRDSCWDLLSPLC 313
           RT P A ++  +P   +P++D  W    PLC
Sbjct: 8   RTNPGAGNQTTTPWKKTPAKDRDWRWRIPLC 38


>02_02_0426 - 10087547-10089054,10090744-10090762
          Length = 508

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 185 KPWWSSAVYSTLRTEPSASSKVYSPCTASPSRDSC 289
           +PWW     + +   P A      PC  SPS   C
Sbjct: 437 RPWWEKEAATAVPDPPCARVATPEPCFHSPSYYEC 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,360,573
Number of Sequences: 37544
Number of extensions: 150492
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)