Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I22
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 27 2.3
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 2.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 3.1
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 27 4.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 4.1
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 4.1
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 5.4
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 26 5.4
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 26 5.4
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 26 7.1
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p... 26 7.1
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 9.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 9.4
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 25 9.4
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 25 9.4
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 382 SVITAYLPWRPKTSFPQPLATQFLLVSKLSPGSGRQIMLM 501
++I+ ++P+ PKTSFP Q L S +G ++ M
Sbjct: 1208 ALISRWIPFIPKTSFPSLAEIQSRLTYVTSVATGEKVKSM 1247
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 469 SPGSGRQIMLMCSARLKGACIRRSATSFLRLFVLKSSCMIISSNESHLVV 618
S G I+ +C LKG+C R +L+ F +C +I S E L V
Sbjct: 882 STGGYENILNICEKYLKGSCSRLEFRKYLQKF-NNETCYMICSIERLLKV 930
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 560 SLKNDVALLRMHAPFNLAEHINMICLPDPGDSFDTSKN 447
S N + R+HA + L + ++ICL + +T KN
Sbjct: 845 SALNSAPIYRLHAAYKLVKAEDIICLSGLREIVETKKN 882
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 321 LVRCSSELQRGFGTIPISIFFSYHRVSALETKDVLPPAVGDA 446
L R E Q+ + P +FF + LE + LPPA+ DA
Sbjct: 110 LKRPKEESQQIYLLRPAMVFFLAQAPNPLEIESALPPAMFDA 151
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Frame = -2
Query: 717 RHDWRSH-RLQVRP-GQFEGESRRM------GHPRPXKEMLDHQVRL 601
R ++S+ R+ RP G +G RR GHP P +EML Q+ L
Sbjct: 43 RDSYKSNSRMDHRPDGYHDGRGRRAYRKHYWGHPTPIEEMLPSQMEL 89
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -3
Query: 272 TGGQGHLPG--RRWSPPGLSHR*QPLQ--VGRAGRLGHRVRAEGRARGLRQRGP 123
TGG GH+PG + + P H + + +A +RA R LRQR P
Sbjct: 1574 TGGLGHMPGWWFQMASPNTGHLLTQFENAITKALHSNGELRARLRVEALRQRFP 1627
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 432 AVGDAVLAGVEAIPRVREADHVDVLGEVEGRVHPQERHVVLKAFRVEIFVY 584
+ +A + AIP E D + E +G++ +E+ V EIF Y
Sbjct: 837 SASEAAAPDLAAIPIPNEVDDAEAADEKDGKLVEEEQRVTGDVVFSEIFSY 887
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 731 IHPQVVMTGAHIAYKYAPGNLRA 663
IHPQV++ G IA K A LRA
Sbjct: 117 IHPQVIIDGYRIATKTAIDALRA 139
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -3
Query: 488 CLPDPGDSFD-TSKNCVA 438
C+P+PG +FD K+CV+
Sbjct: 49 CIPEPGSTFDPNEKSCVS 66
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/37 (21%), Positives = 16/37 (43%)
Frame = -1
Query: 193 AGLVAWGIGCGQKDVPAVYANVARMRSWVDRKMNAWG 83
A V WG+ G++ + + ++W+ WG
Sbjct: 558 ASAVTWGVYPGREIIQSTIIAEVSFKAWLSESFQVWG 594
>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 648 GHPRPXKEMLDHQVRLVRGNNHTRRFQHEKP*ERRGAPAD 529
GHP E+++ V+++RG Q E+ +R PAD
Sbjct: 195 GHPEFSTEVVNTMVKVLRGTEVFTEQQKEEALKRSENPAD 234
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -1
Query: 151 VPAVYANVARMRSWVDRKMNAWGYXNHHLHYLRHSQNK 38
+P V N A SW+ N W ++ L H++ +
Sbjct: 107 IPRVEGNAADPFSWIPDGKNVWDSPPKYIRVLSHNKKE 144
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 339 ELQRGFGTIPISIFFSYH 392
EL+RG+ TIP+ I +H
Sbjct: 1982 ELERGYATIPLKIDVPFH 1999
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 375 SKSVWCRTLAAIRCCSEPDLGPGSVCTTVSCAPGDRRAGTL 253
S +V C +AA+R + LGPG T+ C PG R L
Sbjct: 335 SSAVNC--VAAVRLAKK--LGPGHRIVTLLCDPGSRHFSKL 371
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 1 FFFFFFLKICGRFY 42
FFFFFF C RF+
Sbjct: 79 FFFFFFFSHCRRFH 92
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 280 RTRNCRADGTWSQVW 324
RTR DG W++VW
Sbjct: 649 RTRESEVDGEWTRVW 663
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,291,650
Number of Sequences: 5004
Number of extensions: 70487
Number of successful extensions: 231
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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