Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I20
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462... 30 2.0
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 29 3.4
07_01_0567 - 4214196-4214351,4214539-4214845,4215005-4215069,421... 29 3.4
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15... 29 4.5
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152... 29 4.5
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 29 4.5
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 29 6.0
03_06_0233 + 32530174-32530492,32531081-32531127,32531277-325314... 29 6.0
02_02_0537 + 11308195-11309667 29 6.0
01_05_0645 - 23899579-23904483 29 6.0
10_08_0898 + 21424379-21424792,21424974-21425723 28 7.9
06_03_0712 + 23803597-23803945,23804118-23805479,23805743-238058... 28 7.9
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 28 7.9
01_01_0060 + 477667-477816,479312-479722 28 7.9
>05_01_0536 -
4622767-4622865,4623550-4623673,4624571-4624685,
4624784-4625028,4625081-4625316
Length = 272
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = -1
Query: 595 FAHAARTNLKSLQVIQSRFCRIAV-GAPWFLRNVDLHDDLELDSFSKYLQSASLRHF--E 425
F A L + +++F ++AV GAP +LR VDL D LQ HF
Sbjct: 103 FRKNALAALAAASSSKAKFVKVAVDGAP-YLRKVDLEAYRGYDQLLAALQDKFFSHFTIR 161
Query: 424 KAARHENPLI--VAAGNYIPDPVDR 356
K E L+ V+ Y+P D+
Sbjct: 162 KLGNEEMKLVDAVSGNEYVPTYEDK 186
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -3
Query: 404 PSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRS 267
P H + + RP RPNG P A GS I +HRS
Sbjct: 59 PRHSAAFSRSLRPCRPNGPPPAFASAEFPGSVPDIAQMPPRRRHRS 104
>07_01_0567 -
4214196-4214351,4214539-4214845,4215005-4215069,
4215406-4215471,4215594-4215639,4215671-4216200
Length = 389
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 472 DSFSKYLQSASLRHFEKAARHENPL 398
D+F +Y+ + SLR+F HE P+
Sbjct: 167 DTFDRYVSAGSLRYFLNCVSHEQPM 191
>11_01_0022 +
151233-151515,152632-152852,153579-153656,154558-154674,
155970-156316,156504-157032
Length = 524
Score = 29.1 bits (62), Expect = 4.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 554 NLKGFQVGAGCVSEHYACIR 613
N +QVG GC+S+ Y C+R
Sbjct: 348 NATNYQVGTGCLSDIYFCLR 367
>06_01_0196 +
1520015-1520191,1520483-1520527,1521851-1521910,
1522246-1522358,1522432-1522642,1523087-1523133,
1523211-1523369,1523521-1523624,1524300-1524634
Length = 416
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 244 SDGFDEDGDRCLWCLKAP 297
SDGFDE D C CL+ P
Sbjct: 282 SDGFDEGADACAVCLERP 299
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -3
Query: 344 STSPKARHYGSS*SINGAFRHHK-HRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 174
S SP++R++ S S + A R ++ HR S SL+ G HR + S SPD L
Sbjct: 168 SRSPRSRYHSYSPSPSPARRDYRDHRDDYSPGESLSPHGQDKR-HHRSNGRSASPDEL 224
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -3
Query: 344 STSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 174
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 973 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 1028
>03_06_0233 +
32530174-32530492,32531081-32531127,32531277-32531413,
32531673-32531841,32532598-32532885,32533021-32533107,
32533454-32534152,32534244-32534735
Length = 745
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 377 HTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTS 222
H+ NG PS+ K R GSS ++ +F+ ++ S N +L++ +T+
Sbjct: 519 HSLDPELNGSPSSKDKLRKDGSSKLLSHSFKDLGNKDIRSDNVALSSVAATT 570
>02_02_0537 + 11308195-11309667
Length = 490
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -3
Query: 344 STSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 174
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 131 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 186
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -3
Query: 344 STSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 174
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 1250 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 1305
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 284 HHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPD 180
HH H PS AT +TS H+ S LSF+ D
Sbjct: 101 HHHHHIGGMGEPSGATPSATSS-DHQTSMLSFADD 134
>06_03_0712 +
23803597-23803945,23804118-23805479,23805743-23805811,
23806050-23806330,23806817-23807076,23807521-23807689,
23807796-23808068,23808251-23808499
Length = 1003
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 515 RRSDGYPAES*LNNLKGFQVGAGCVSEHYACIRHDGAYTSFVXKL 649
+ SD +PA S L GFQ+ + + C++ YT KL
Sbjct: 320 KNSDFWPAVSELQGTSGFQIEPWKLDNNETCLQRTLTYTKAASKL 364
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = -3
Query: 374 TRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSS---NPSLATKGSTSELTHRH 204
T P P+ PS+ P RH S + G R + SPS S PS + S S T
Sbjct: 5 TAPPPPSSPPSSPPPLRH---SPAALGTPRSRRRHSPSPSLALTPSSSASASASASTSSR 61
Query: 203 SPLSFSP 183
+ SP
Sbjct: 62 PKVRPSP 68
>01_01_0060 + 477667-477816,479312-479722
Length = 186
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 287 RHHKHRS-PSSSNPSLATKGSTSELTHRHSPLSFSPDL 177
RHH H S SSS+P +TK + ++L H ++ L
Sbjct: 32 RHHHHYSTSSSSSPPSSTKEAVTQLDHLEQAAAYIKQL 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,475,278
Number of Sequences: 37544
Number of extensions: 454961
Number of successful extensions: 1125
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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