Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I19
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    35   0.011
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    28   1.3  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   5.2  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -3

Query: 369 NLRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEP 214
           N     +++ +DE +P T +Q RL++G R     N SHT+  + E V    P
Sbjct: 322 NSTTPHASLQIDENKPTTRIQVRLSNGGRTVLTVNLSHTLHDIYEAVRAVSP 373



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 628 GPXRXYSDPENAEFLSCIRRGEIP 557
           GP   Y DP N E L  I  G  P
Sbjct: 228 GPIYTYDDPANQEMLRYINSGRAP 251


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 321 VTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSL 187
           VT +Q R+ +G R   RF+ +  V  +  +V         +PFSL
Sbjct: 353 VTRIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVAEGADKQPFSL 397


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 120 EQVRLRQGSRRRHPAPRSGRP 182
           + +RL    R R P+PRSGRP
Sbjct: 337 QSLRLGSLHRSRSPSPRSGRP 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,583
Number of Sequences: 5004
Number of extensions: 26286
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)