Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I19
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634...    63   3e-10
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556...    60   3e-09
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073...    31   0.77 
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816...    31   1.0  
07_03_1104 + 24001594-24002139                                         29   3.1  
12_02_0382 - 18392481-18392525,18392926-18393018,18393149-183932...    29   4.1  
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    29   4.1  

>04_04_0156 +
           23160681-23160862,23161090-23161179,23163145-23163433,
           23164574-23164669,23164755-23165123
          Length = 341

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 27/58 (46%), Positives = 38/58 (65%)
 Frame = -3

Query: 345 VTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFP 172
           + +D++ P T++Q RLADGTR+  RFN  HTVG +R F+  + P    RP+ L T FP
Sbjct: 260 IVVDDSLPFTSIQLRLADGTRMVARFNMHHTVGDIRSFIDASRPG-ATRPYQLQTGFP 316



 Score = 32.3 bits (70), Expect = 0.44
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 628 GPXRXYSDPENAEFLSCIRRGEIP 557
           GP R Y DP NA+F+  I++ + P
Sbjct: 172 GPLRDYDDPANADFIESIKKSQCP 195


>06_03_0850 -
           25354002-25354391,25354480-25354575,25355352-25355634,
           25357213-25357799
          Length = 451

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 30/111 (27%), Positives = 49/111 (44%)
 Frame = -3

Query: 504 RHEECPRHVVKPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXXXANLRAAQSAVTLDETQ 325
           + E+CP  V +   F G    LG+P+                      +    +T+D++ 
Sbjct: 317 KEEKCPEPVKRAAPFHGAAKTLGTPSDNNSTPPEATSAAAAASSTETASKTVTITVDDSL 376

Query: 324 PVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFP 172
           P T+LQ R  DG+R+   FN SHT+  +R F+    P  +   ++L   FP
Sbjct: 377 PSTSLQIRFVDGSRMVAHFNTSHTIADVRAFIDTTRPG-EAGDYTLQAGFP 426



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 628 GPXRXYSDPENAEFLSCIRRGEIP 557
           GP R + DP NA FL  I+  E P
Sbjct: 275 GPLRSFDDPANASFLKSIKNSECP 298


>03_06_0557 +
           34704990-34705400,34706271-34706485,34707142-34707367,
           34707447-34707532,34708030-34708121,34708232-34708471,
           34709455-34709750
          Length = 521

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 99  PLHDRRVEQVRLR---QGSRRRHPAPRSGRPSAD*MAAAGTPAPLATRTPSA 245
           P H RR +Q RLR     S    P+PRSGR  A   AAA  PA +A     A
Sbjct: 23  PPHSRRQQQQRLRSPTSPSLSPSPSPRSGRHKA---AAAAPPAVVAAAAVGA 71


>06_03_1303 +
           29180837-29181205,29181289-29181306,29181337-29181622,
           29185008-29186284,29186499-29187005
          Length = 818

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 105 HDRRVEQVRLRQGSRRRHPAPR-SGRPSAD*MAAAGTPAPLATRT 236
           +D+R+E+ R R+  R R P+P  S  PS    A+A TP    T T
Sbjct: 511 YDKRMERERERERKRVRAPSPSPSPSPSPSPSASATTPTQTGTST 555


>07_03_1104 + 24001594-24002139
          Length = 181

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 529 RDPLXXXXXXESHRDVCSSGTPRSPGRCXGAXDPASTVXPSRYRH 663
           R P        +HRDV  +  P S GR     D AS     R RH
Sbjct: 50  RKPSAAAAAPPAHRDVVVAAAPASSGRVAADADAASEADGRRRRH 94


>12_02_0382 -
           18392481-18392525,18392926-18393018,18393149-18393213,
           18393363-18393425,18393609-18393705,18395906-18395983,
           18396012-18396110
          Length = 179

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
 Frame = +1

Query: 34  KSKSILYKTVLIQQNYWC-RYLSRCMTVELSRFACARXRGVVTQLRAREGRQQTEWPQLV 210
           K K I+Y T L    YW  RY+     VELS    A    V      +     TE   L 
Sbjct: 57  KEKKIIYLTSLNPYGYWMQRYMQNYDEVELSALGMAIGTVVTVAEILKNNGLATEKKILT 116

Query: 211 RRLRSRHELPQRADRVAVVE 270
             + ++ E   R  R A +E
Sbjct: 117 STIGTKDESKGRLVRKAKIE 136


>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 150 RRHPAPRSGRPSAD*MAAAGTPA 218
           RRHP+P +GR SA    AAG+ A
Sbjct: 51  RRHPSPNAGRSSAAAAEAAGSQA 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,649,920
Number of Sequences: 37544
Number of extensions: 244548
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)