Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I18
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    31   0.21 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   1.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   1.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    28   2.0  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    27   3.4  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   7.9  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 21/62 (33%), Positives = 25/62 (40%)
 Frame = -2

Query: 421 GYQNRHANRTGGDGYYGNGDVSEGAHHAXXXXXXXXXXXGFQGGYKGRSRGAPRGATRGA 242
           G +N  A R G  G+ G    S G                 +GG+ G SRG  RG  RG 
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGS---RGGFGGGSRGGSRGGFRGG 185

Query: 241 SR 236
           SR
Sbjct: 186 SR 187


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 425 ILSVLKSFPGSICFGNHHLV 484
           +LS+++ + GS+C GN H++
Sbjct: 726 LLSIIQKYIGSLCIGNEHVI 745


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 182 VNTPMHWYATFYGSINNRLRNSDGLN 105
           + TP H  AT YG+++N  R+++G++
Sbjct: 913 IYTPSHAQATLYGNMDNNDRDNEGIH 938


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 378 IMATVTCQKVHITPRTVVSGMEKATASREDTRDAVEELLEE 256
           ++   T +K +I P+TV + M+  T S +   D   E LEE
Sbjct: 606 LIKQATSEKGNILPKTVETHMKALTTSVDKVLDQTAEALEE 646


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 341 VMCTF*HVTVAIISVATGTVRMPILVAVILSVLKSFPGSICF 466
           V CTF H  + ++ ++   V   IL A  LS L     SIC+
Sbjct: 40  VFCTFNHPNMGLVLISFAKVDGHILAAYALSKLGPDTFSICY 81


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 301 FQGGYKGRSRGAPRGATRGASRPPRAQH 218
           F+GGY+G  R +  G +R    P R+ H
Sbjct: 217 FRGGYRGGFRKSSGGGSRFGRGPTRSSH 244


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 339 PRTVVSGMEKATASREDTRDAVEELLEEQHAVRL 238
           PR V   + +   SR+  RD  +E LEE    RL
Sbjct: 358 PRNVADSLRRKDDSRKRARDRKKERLEEASQKRL 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,057
Number of Sequences: 5004
Number of extensions: 45320
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)