Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I18
         (863 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.074
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_34741| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)                  28   8.5  
SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16)                    28   8.5  
SB_31752| Best HMM Match : Bac_surface_Ag (HMM E-Value=0.0069)         23   9.8  

>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -2

Query: 439 QNRQYDGYQNRHANRTG-GDGYYGNGDVSEGAHHAXXXXXXXXXXXGFQGGYKGRSRGAP 263
           Q   Y+GY   + +  G G G Y + D   G  +              +GG  G   G P
Sbjct: 455 QGGGYEGYSGGYRDDYGYGGGSYDHYDSYYGGGYDDYYGGGPPRGGP-RGGRGGSRGGPP 513

Query: 262 RGATRGASRPPRAQ 221
           RGA RG S PPR +
Sbjct: 514 RGAPRGRSGPPRGR 527


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = -3

Query: 327  VSGMEKATASREDTRDAVEELLEEQHAVRLGLPALNTTXRRSDN 196
            ++ +  ATAS+E+   AVEE  + +  +++ + AL T  +++ N
Sbjct: 959  LAAINDATASKEELESAVEEKAKAETKLKVKISALETKLKKAVN 1002


>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/67 (28%), Positives = 23/67 (34%)
 Frame = -2

Query: 445 GFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAHHAXXXXXXXXXXXGFQGGYKGRSRGA 266
           G+ NR   GY+       GG GY G G    G H             G   GY+G  +  
Sbjct: 750 GYGNRSGGGYRGGGGYGGGGGGYRGGGGYG-GGHRGGGGYGGGGHRGGSYSGYRGSYKSG 808

Query: 265 PRGATRG 245
             G   G
Sbjct: 809 GYGQGSG 815


>SB_34741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 535 AAEALSLIVKAVTAIGADKVVITKTDRTREGFQNRQYDGYQNR 407
           A   +SL  +A+TA GA ++  + T+ TR+ ++ R Y  +  R
Sbjct: 100 AGRKISLPEEAITAYGARRLSESTTEPTRD-YRRRSYSAFSER 141


>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
 Frame = -2

Query: 445 GFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAHHAXXXXXXXXXXXGFQGGYK------ 284
           G+ +  + G    +    G  G Y NG  S G  +                GY       
Sbjct: 239 GYADNSWSGGYGSYDGGYGNGGDYSNGYSSYGGGYGGGYDSSMGQYSQEASGYGPSRGTG 298

Query: 283 GRSRGAPRGATRGASRP 233
           GR RGAPRG+  G  RP
Sbjct: 299 GRGRGAPRGS--GGYRP 313


>SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
          Length = 445

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -2

Query: 286 KGRSRGAPRGATRGASR---PPRAQHY 215
           +GR RG PRG  RG  R   PP  +H+
Sbjct: 395 RGRVRGGPRGRGRGRGRRNPPPVCRHF 421


>SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16)
          Length = 377

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 339 PRTVVSGMEKATASREDTRDAVEELLEEQ 253
           PRT VSG   +T+  + TR+ V+ L +EQ
Sbjct: 24  PRTTVSGQLTSTSVNDRTREYVQVLQDEQ 52


>SB_31752| Best HMM Match : Bac_surface_Ag (HMM E-Value=0.0069)
          Length = 354

 Score = 23.4 bits (48), Expect(2) = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 388 GDGYYGNGDVSEG 350
           GDG YG+GD  +G
Sbjct: 314 GDGDYGDGDYGDG 326



 Score = 23.0 bits (47), Expect(2) = 9.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 391 GGDGYYGNGD 362
           GGDG YG+GD
Sbjct: 304 GGDGDYGDGD 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,699,915
Number of Sequences: 59808
Number of extensions: 394123
Number of successful extensions: 1225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)