Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I18
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047663-7|AAC04448.1|  178|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81076-1|CAB03050.2|  186|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AF047663-7|AAC04448.1|  178|Caenorhabditis elegans Hypothetical
           protein W09G12.6 protein.
          Length = 178

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -2

Query: 295 GGYKGRSRGAPRGATRGASRPPRAQ 221
           GG  G   GAP GA+ GAS  P AQ
Sbjct: 126 GGAAGAPAGAPAGASAGASAAPAAQ 150


>Z81076-1|CAB03050.2|  186|Caenorhabditis elegans Hypothetical
           protein F35C5.1 protein.
          Length = 186

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 545 SVRLGRRDRNVCIDSGSLPLRSPPFSN-SGLGPSFLQSSS 661
           S ++ RRDRN  IDS  +P R P  S+ S  G S+ +S +
Sbjct: 63  SEKVQRRDRNSTIDSLKVPRRPPQASSMSSSGKSYRKSGN 102


>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -2

Query: 442 FQNRQYDGYQNRHANRTGG----DGYYGNGDVSEG 350
           F NRQ  GY N + N   G    +GYYGNG    G
Sbjct: 113 FGNRQQIGYNNVYGNGYYGNGYNNGYYGNGYYGNG 147


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = -2

Query: 421 GYQNRHANRTGGDGYYGNGDVSEGAHHAXXXXXXXXXXXGFQGGYKGRSRGAPRGATRGA 242
           G QN + N   G   + NG   +                GF+GGY+G  RG  RG  +G 
Sbjct: 793 GPQNFYQN---GPNNFNNGPPEQQGQFRGNQGNDGGFRGGFRGGYRG--RGGGRGGFQGG 847

Query: 241 SRPPRAQHYXKEI 203
           SR   +Q    E+
Sbjct: 848 SRGDDSQPSQSEL 860


>Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical
           protein C25G4.4 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 381 DIMATVTCQ-KVHITPRTVVSGMEKATASREDTRDAVEELLE 259
           DI +T+  +  V   PRT  S  E    +RE T + VEEL++
Sbjct: 363 DIQSTLAEEHSVKYQPRTSSSSQESLHTAREFTEEKVEELID 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,605
Number of Sequences: 27780
Number of extensions: 284838
Number of successful extensions: 785
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)