Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I14
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    26   7.4  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    25   9.8  

>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 527 HSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFR 420
           H  LE LTP  +  +    + NN  + +L IN+ ++
Sbjct: 183 HEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYK 218


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 359 GPAAPRSPAGTTRPPSE 409
           G A+P +PA  TRPP E
Sbjct: 296 GAASPPAPAQDTRPPEE 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,200
Number of Sequences: 5004
Number of extensions: 39263
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)