Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I14
(818 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC000382-1|AAH00382.1| 390|Homo sapiens interleukin enhancer bi... 133 6e-31
AY099265-1|AAM45141.1| 390|Homo sapiens interleukin enhancer bi... 133 6e-31
AL713889-3|CAI13612.1| 390|Homo sapiens interleukin enhancer bi... 133 6e-31
AL592150-1|CAI18796.1| 390|Homo sapiens interleukin enhancer bi... 133 6e-31
AK223326-1|BAD97046.1| 390|Homo sapiens interleukin enhancer bi... 133 6e-31
U10323-1|AAA20993.1| 406|Homo sapiens NF45 protein protein. 132 1e-30
X98265-1|CAA66918.1| 611|Homo sapiens M-phase phosphoprotein 4 ... 50 1e-05
AF147209-1|AAD33966.1| 702|Homo sapiens double-stranded RNA-bin... 50 1e-05
BC108731-1|AAI08732.1| 589|Homo sapiens STRBP protein protein. 49 2e-05
BC017732-1|AAH17732.1| 672|Homo sapiens spermatid perinuclear R... 49 2e-05
BC002693-1|AAH02693.2| 615|Homo sapiens STRBP protein protein. 49 2e-05
AL365338-5|CAH70300.1| 672|Homo sapiens spermatid perinuclear R... 49 2e-05
AL365338-4|CAH70299.1| 658|Homo sapiens spermatid perinuclear R... 49 2e-05
AK027890-1|BAB55434.1| 672|Homo sapiens protein ( Homo sapiens ... 49 2e-05
AK002169-1|BAA92120.1| 490|Homo sapiens spermatid perinuclear R... 49 2e-05
AF333337-1|AAK20832.1| 673|Homo sapiens spermatid perinuclear R... 49 2e-05
X98264-1|CAA66917.1| 440|Homo sapiens M-phase phosphoprotein 4 ... 49 2e-05
U10324-1|AAA20994.1| 671|Homo sapiens NF90 protein protein. 49 2e-05
BC064836-1|AAH64836.1| 706|Homo sapiens ILF3 protein protein. 49 2e-05
AJ271746-1|CAC01406.1| 690|Homo sapiens double-stranded RNA bin... 49 2e-05
AJ271745-1|CAC01405.1| 702|Homo sapiens double-stranded RNA bin... 49 2e-05
AJ271744-1|CAC01404.1| 564|Homo sapiens DRBP76 alpha protein. 49 2e-05
AF320247-1|AAK07425.1| 894|Homo sapiens 110 kDa NFAR protein pr... 49 2e-05
AF320244-1|AAK07424.1| 702|Homo sapiens 90 kDa NFAR protein pro... 49 2e-05
AF202445-3|AAF82686.1| 515|Homo sapiens dsRNA binding protein N... 49 2e-05
AF202445-2|AAF82685.1| 709|Homo sapiens dsRNA binding protein N... 49 2e-05
AF202445-1|AAF82687.1| 576|Homo sapiens dsRNA binding protein T... 49 2e-05
AF167570-1|AAD51099.1| 894|Homo sapiens nuclear factor associat... 49 2e-05
AF167569-1|AAD51098.1| 702|Homo sapiens nuclear factor associat... 49 2e-05
AF141870-1|AAD37575.1| 764|Homo sapiens translational control p... 49 2e-05
AB209062-1|BAD92299.1| 450|Homo sapiens interleukin enhancer bi... 49 2e-05
BC048314-1|AAH48314.1| 351|Homo sapiens ILF3 protein protein. 47 9e-05
BC062986-1|AAH62986.1| 606|Homo sapiens ZFR protein protein. 41 0.006
BC051893-1|AAH51893.1| 631|Homo sapiens ZFR protein protein. 41 0.006
AK025481-1|BAB15147.1| 214|Homo sapiens protein ( Homo sapiens ... 41 0.006
AJ314790-1|CAC40818.1| 1057|Homo sapiens putative zinc finger pr... 41 0.006
AF100742-1|AAD40385.1| 418|Homo sapiens M-phase phosphoprotein ... 41 0.006
Z74616-1|CAA98969.1| 1366|Homo sapiens prepro-alpha2(I) collagen... 37 0.076
Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V) pr... 37 0.076
Y00724-1|CAA68709.1| 765|Homo sapiens protein ( Human mRNA for ... 37 0.076
J04478-1|AAA51859.1| 463|Homo sapiens COL5A2 protein. 37 0.076
J03464-1|AAB59374.1| 1366|Homo sapiens COL1A2 protein. 37 0.076
BC086874-1|AAH86874.1| 1139|Homo sapiens COL5A2 protein protein. 37 0.076
BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha... 37 0.076
BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha... 37 0.076
AY016295-1|AAL13166.1| 1347|Homo sapiens type V preprocollagen a... 37 0.076
AF004877-1|AAB93981.1| 1366|Homo sapiens pro-alpha 2(I) collagen... 37 0.076
AB209045-1|BAD92282.1| 1502|Homo sapiens alpha 2 type V collagen... 37 0.076
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr... 37 0.10
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 37 0.10
X06700-1|CAA29886.1| 517|Homo sapiens alpha1 (III) collagen pro... 37 0.10
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 37 0.10
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 37 0.10
AB029009-1|BAA83038.1| 902|Homo sapiens KIAA1086 protein protein. 36 0.13
X01655-1|CAA25821.1| 132|Homo sapiens protein ( Human mRNA for ... 35 0.31
AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha ... 34 0.54
AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha ... 34 0.54
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ... 34 0.71
X13783-1|CAA32030.1| 714|Homo sapiens alpha-1 type 2 collagen (... 34 0.71
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 34 0.71
BC032892-1|AAH32892.1| 188|Homo sapiens LOC649305 protein protein. 34 0.71
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 34 0.71
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 34 0.71
AF036130-2|AAC33528.1| 678|Homo sapiens collagen type IX alpha ... 33 0.94
AF036130-1|AAC33527.1| 921|Homo sapiens collagen type IX alpha ... 33 0.94
X65018-1|CAA46152.1| 375|Homo sapiens lung surfactant protein D... 33 1.2
X54412-1|CAA38276.1| 931|Homo sapiens protein ( Human mRNA for ... 33 1.2
L05485-1|AAB59450.1| 375|Homo sapiens surfactant protein D prot... 33 1.2
CR541948-1|CAG46746.1| 375|Homo sapiens SFTPD protein. 33 1.2
BC063646-1|AAH63646.1| 678|Homo sapiens collagen, type IX, alph... 33 1.2
BC022318-1|AAH22318.1| 375|Homo sapiens surfactant, pulmonary-a... 33 1.2
AY216721-1|AAO22991.1| 375|Homo sapiens surfactant, pulmonary-a... 33 1.2
AL512662-3|CAI14436.1| 375|Homo sapiens surfactant, pulmonary-a... 33 1.2
AL160262-4|CAI42321.1| 921|Homo sapiens collagen type IX alpha ... 33 1.2
AL160262-3|CAI42320.1| 448|Homo sapiens collagen type IX alpha ... 33 1.2
AL080275-3|CAI19590.1| 921|Homo sapiens collagen type IX alpha ... 33 1.2
AL080275-2|CAI19589.1| 448|Homo sapiens collagen type IX alpha ... 33 1.2
X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein. 33 1.6
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ... 33 1.6
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph... 33 1.6
AY898961-1|AAX84028.1| 540|Homo sapiens type XXIII collagen pro... 33 1.6
AY158895-1|AAO18361.1| 540|Homo sapiens alpha 1 type XXIII coll... 33 1.6
AL137461-1|CAB70749.1| 201|Homo sapiens hypothetical protein pr... 33 1.6
Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ... 32 2.2
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ... 32 2.2
AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen mid... 32 2.2
AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen lon... 32 2.2
AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collag... 32 2.2
AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen pro... 32 2.2
AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein. 32 2.2
Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for ... 32 2.9
X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for ... 32 2.9
M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collage... 32 2.9
M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen ... 32 2.9
BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein. 32 2.9
AL160262-2|CAO03366.1| 227|Homo sapiens collagen type IX alpha ... 32 2.9
AL080275-1|CAO03651.1| 227|Homo sapiens collagen type IX alpha ... 32 2.9
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 31 3.8
X98568-1|CAA67178.1| 680|Homo sapiens type X collagen protein. 31 3.8
X72579-1|CAA51170.1| 680|Homo sapiens collagen X protein. 31 3.8
X65120-1|CAA46236.1| 629|Homo sapiens alpha1(X)collagen protein. 31 3.8
X60382-1|CAA42933.1| 680|Homo sapiens collagen subunit (alpha-... 31 3.8
BC130623-1|AAI30624.1| 680|Homo sapiens collagen, type X, alpha... 31 3.8
BC130621-1|AAI30622.1| 680|Homo sapiens collagen, type X, alpha... 31 3.8
AL121963-4|CAB87590.1| 680|Homo sapiens collagen type X alpha 1... 31 3.8
U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 ... 31 5.0
U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 ... 31 5.0
M63473-1|AAA51558.1| 762|Homo sapiens alpha-5 type IV collagen ... 31 5.0
M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen ... 31 5.0
M31115-1|AAA52045.1| 772|Homo sapiens COL4A5 protein. 31 5.0
AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha ... 31 5.0
AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha ... 31 5.0
AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha ... 31 5.0
X55525-1|CAA39142.1| 397|Homo sapiens type I collagen protein. 31 6.6
V00503-1|CAA23761.1| 740|Homo sapiens protein ( Human mRNA enco... 31 6.6
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 31 6.6
BC042428-1|AAH42428.1| 309|Homo sapiens COL23A1 protein protein. 31 6.6
BC036012-1|AAH36012.1| 964|Homo sapiens tripartite motif-contai... 31 6.6
AF213365-1|AAL36460.1| 964|Homo sapiens POB1 protein. 31 6.6
AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen prot... 31 6.6
AB020705-1|BAA74921.1| 979|Homo sapiens KIAA0898 protein protein. 31 6.6
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 30 8.8
M11162-1|AAA75386.1| 138|Homo sapiens alpha-1 type I collagen p... 30 8.8
AL356755-3|CAI23466.1| 299|Homo sapiens GDNF family receptor al... 30 8.8
AJ291674-1|CAC19691.1| 299|Homo sapiens putative GDNF family re... 30 8.8
AF258676-1|AAG16733.1| 845|Homo sapiens MUCDHL-FL protein. 30 8.8
AF258674-2|AAG16731.1| 845|Homo sapiens MUCDHL-FL protein. 30 8.8
>BC000382-1|AAH00382.1| 390|Homo sapiens interleukin enhancer
binding factor 2, 45kDa protein.
Length = 390
Score = 133 bits (322), Expect = 6e-31
Identities = 60/152 (39%), Positives = 91/152 (59%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
L+D+ R G EPLTPW++DLL H+ +MNNP RQ L +NVA+RR L ++A GLFLPG G
Sbjct: 227 LKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVG 286
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDISLEIT 189
+ DPCE+ + R H +R+++ GG +LG + ++ EI+
Sbjct: 287 ITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQE--GDASYLASEIS 344
Query: 188 VWDGVVVSPLAPAYNDSPEPMDTDDKEEESQD 93
WDGV+V+P AY PE + +++EE +++
Sbjct: 345 TWDGVIVTPSEKAYEKPPEKKEGEEEEENTEE 376
Score = 83.4 bits (197), Expect = 9e-16
Identities = 37/64 (57%), Positives = 50/64 (78%)
Frame = -3
Query: 741 GSXVTXTSXXVRVLITTXHQNLRKIEPDVHLDYKVISSHLAAIRHSRWFEENAHHSSIKV 562
G ++ + V++LITT NLRK++P++HLD KV+ S LAAIRH+RWFEENA S++KV
Sbjct: 163 GFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQSTVKV 222
Query: 561 LIRL 550
LIRL
Sbjct: 223 LIRL 226
>AY099265-1|AAM45141.1| 390|Homo sapiens interleukin enhancer
binding factor 2 protein.
Length = 390
Score = 133 bits (322), Expect = 6e-31
Identities = 60/152 (39%), Positives = 91/152 (59%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
L+D+ R G EPLTPW++DLL H+ +MNNP RQ L +NVA+RR L ++A GLFLPG G
Sbjct: 227 LKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVG 286
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDISLEIT 189
+ DPCE+ + R H +R+++ GG +LG + ++ EI+
Sbjct: 287 ITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQE--GDASYLASEIS 344
Query: 188 VWDGVVVSPLAPAYNDSPEPMDTDDKEEESQD 93
WDGV+V+P AY PE + +++EE +++
Sbjct: 345 TWDGVIVTPSEKAYEKPPEKKEGEEEEENTEE 376
Score = 83.4 bits (197), Expect = 9e-16
Identities = 37/64 (57%), Positives = 50/64 (78%)
Frame = -3
Query: 741 GSXVTXTSXXVRVLITTXHQNLRKIEPDVHLDYKVISSHLAAIRHSRWFEENAHHSSIKV 562
G ++ + V++LITT NLRK++P++HLD KV+ S LAAIRH+RWFEENA S++KV
Sbjct: 163 GFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQSTVKV 222
Query: 561 LIRL 550
LIRL
Sbjct: 223 LIRL 226
>AL713889-3|CAI13612.1| 390|Homo sapiens interleukin enhancer
binding factor 2, 45kDa protein.
Length = 390
Score = 133 bits (322), Expect = 6e-31
Identities = 60/152 (39%), Positives = 91/152 (59%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
L+D+ R G EPLTPW++DLL H+ +MNNP RQ L +NVA+RR L ++A GLFLPG G
Sbjct: 227 LKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVG 286
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDISLEIT 189
+ DPCE+ + R H +R+++ GG +LG + ++ EI+
Sbjct: 287 ITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQE--GDASYLASEIS 344
Query: 188 VWDGVVVSPLAPAYNDSPEPMDTDDKEEESQD 93
WDGV+V+P AY PE + +++EE +++
Sbjct: 345 TWDGVIVTPSEKAYEKPPEKKEGEEEEENTEE 376
Score = 83.4 bits (197), Expect = 9e-16
Identities = 37/64 (57%), Positives = 50/64 (78%)
Frame = -3
Query: 741 GSXVTXTSXXVRVLITTXHQNLRKIEPDVHLDYKVISSHLAAIRHSRWFEENAHHSSIKV 562
G ++ + V++LITT NLRK++P++HLD KV+ S LAAIRH+RWFEENA S++KV
Sbjct: 163 GFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQSTVKV 222
Query: 561 LIRL 550
LIRL
Sbjct: 223 LIRL 226
>AL592150-1|CAI18796.1| 390|Homo sapiens interleukin enhancer
binding factor 2, 45kDa protein.
Length = 390
Score = 133 bits (322), Expect = 6e-31
Identities = 60/152 (39%), Positives = 91/152 (59%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
L+D+ R G EPLTPW++DLL H+ +MNNP RQ L +NVA+RR L ++A GLFLPG G
Sbjct: 227 LKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVG 286
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDISLEIT 189
+ DPCE+ + R H +R+++ GG +LG + ++ EI+
Sbjct: 287 ITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQE--GDASYLASEIS 344
Query: 188 VWDGVVVSPLAPAYNDSPEPMDTDDKEEESQD 93
WDGV+V+P AY PE + +++EE +++
Sbjct: 345 TWDGVIVTPSEKAYEKPPEKKEGEEEEENTEE 376
Score = 83.4 bits (197), Expect = 9e-16
Identities = 37/64 (57%), Positives = 50/64 (78%)
Frame = -3
Query: 741 GSXVTXTSXXVRVLITTXHQNLRKIEPDVHLDYKVISSHLAAIRHSRWFEENAHHSSIKV 562
G ++ + V++LITT NLRK++P++HLD KV+ S LAAIRH+RWFEENA S++KV
Sbjct: 163 GFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQSTVKV 222
Query: 561 LIRL 550
LIRL
Sbjct: 223 LIRL 226
>AK223326-1|BAD97046.1| 390|Homo sapiens interleukin enhancer
binding factor 2 variant protein.
Length = 390
Score = 133 bits (322), Expect = 6e-31
Identities = 60/152 (39%), Positives = 91/152 (59%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
L+D+ R G EPLTPW++DLL H+ +MNNP RQ L +NVA+RR L ++A GLFLPG G
Sbjct: 227 LKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVG 286
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDISLEIT 189
+ DPCE+ + R H +R+++ GG +LG + ++ EI+
Sbjct: 287 ITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQE--GDASYLASEIS 344
Query: 188 VWDGVVVSPLAPAYNDSPEPMDTDDKEEESQD 93
WDGV+V+P AY PE + +++EE +++
Sbjct: 345 TWDGVIVTPSEKAYEKPPEKKEGEEEEENTEE 376
Score = 83.4 bits (197), Expect = 9e-16
Identities = 37/64 (57%), Positives = 50/64 (78%)
Frame = -3
Query: 741 GSXVTXTSXXVRVLITTXHQNLRKIEPDVHLDYKVISSHLAAIRHSRWFEENAHHSSIKV 562
G ++ + V++LITT NLRK++P++HLD KV+ S LAAIRH+RWFEENA S++KV
Sbjct: 163 GFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQSTVKV 222
Query: 561 LIRL 550
LIRL
Sbjct: 223 LIRL 226
>U10323-1|AAA20993.1| 406|Homo sapiens NF45 protein protein.
Length = 406
Score = 132 bits (320), Expect = 1e-30
Identities = 60/151 (39%), Positives = 90/151 (59%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
L+D+ R G EPLTPW++DLL H+ +MNNP RQ L +NVA+RR L ++A GLFLPG G
Sbjct: 227 LKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVG 286
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDISLEIT 189
+ DPCE+ + R H +R+++ GG +LG + ++ EI+
Sbjct: 287 ITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQE--GDASYLASEIS 344
Query: 188 VWDGVVVSPLAPAYNDSPEPMDTDDKEEESQ 96
WDGV+V+P AY PE + +++EE ++
Sbjct: 345 TWDGVIVTPSEKAYEKPPEKKEGEEEEENTE 375
Score = 83.4 bits (197), Expect = 9e-16
Identities = 37/64 (57%), Positives = 50/64 (78%)
Frame = -3
Query: 741 GSXVTXTSXXVRVLITTXHQNLRKIEPDVHLDYKVISSHLAAIRHSRWFEENAHHSSIKV 562
G ++ + V++LITT NLRK++P++HLD KV+ S LAAIRH+RWFEENA S++KV
Sbjct: 163 GFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQSTVKV 222
Query: 561 LIRL 550
LIRL
Sbjct: 223 LIRL 226
>X98265-1|CAA66918.1| 611|Homo sapiens M-phase phosphoprotein 4
protein.
Length = 611
Score = 49.6 bits (113), Expect = 1e-05
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I+ + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSIVT--ANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 350
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 351 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 381
>AF147209-1|AAD33966.1| 702|Homo sapiens double-stranded
RNA-binding nuclear protein DRBP76 protein.
Length = 702
Score = 49.6 bits (113), Expect = 1e-05
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I+ + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSIVT--ANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 350
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 351 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 381
>BC108731-1|AAI08732.1| 589|Homo sapiens STRBP protein protein.
Length = 589
Score = 49.2 bits (112), Expect = 2e-05
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++L+ I + L A RR + +A G+ LPG G
Sbjct: 225 LRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAGEALRRVMECLASGILLPGGPG 282
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDI---SL 198
L DPCE + A LR+ A G VL + P K S
Sbjct: 283 LHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSW 342
Query: 197 EITVWDGVVVSPLAPAYND 141
+T +G S L + D
Sbjct: 343 SVTDKEGAGSSALKRPFED 361
>BC017732-1|AAH17732.1| 672|Homo sapiens spermatid perinuclear RNA
binding protein protein.
Length = 672
Score = 49.2 bits (112), Expect = 2e-05
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++L+ I + L A RR + +A G+ LPG G
Sbjct: 225 LRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAGEALRRVMECLASGILLPGGPG 282
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDI---SL 198
L DPCE + A LR+ A G VL + P K S
Sbjct: 283 LHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSW 342
Query: 197 EITVWDGVVVSPLAPAYND 141
+T +G S L + D
Sbjct: 343 SVTDKEGAGSSALKRPFED 361
>BC002693-1|AAH02693.2| 615|Homo sapiens STRBP protein protein.
Length = 615
Score = 49.2 bits (112), Expect = 2e-05
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++L+ I + L A RR + +A G+ LPG G
Sbjct: 168 LRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAGEALRRVMECLASGILLPGGPG 225
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDI---SL 198
L DPCE + A LR+ A G VL + P K S
Sbjct: 226 LHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSW 285
Query: 197 EITVWDGVVVSPLAPAYND 141
+T +G S L + D
Sbjct: 286 SVTDKEGAGSSALKRPFED 304
>AL365338-5|CAH70300.1| 672|Homo sapiens spermatid perinuclear RNA
binding protein protein.
Length = 672
Score = 49.2 bits (112), Expect = 2e-05
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++L+ I + L A RR + +A G+ LPG G
Sbjct: 225 LRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAGEALRRVMECLASGILLPGGPG 282
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDI---SL 198
L DPCE + A LR+ A G VL + P K S
Sbjct: 283 LHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSW 342
Query: 197 EITVWDGVVVSPLAPAYND 141
+T +G S L + D
Sbjct: 343 SVTDKEGAGSSALKRPFED 361
>AL365338-4|CAH70299.1| 658|Homo sapiens spermatid perinuclear RNA
binding protein protein.
Length = 658
Score = 49.2 bits (112), Expect = 2e-05
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++L+ I + L A RR + +A G+ LPG G
Sbjct: 211 LRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAGEALRRVMECLASGILLPGGPG 268
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDI---SL 198
L DPCE + A LR+ A G VL + P K S
Sbjct: 269 LHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSW 328
Query: 197 EITVWDGVVVSPLAPAYND 141
+T +G S L + D
Sbjct: 329 SVTDKEGAGSSALKRPFED 347
>AK027890-1|BAB55434.1| 672|Homo sapiens protein ( Homo sapiens
cDNA FLJ14984 fis, clone Y79AA1000349, highly similar to
M.musculus Spnr mRNA for RNA binding protein. ).
Length = 672
Score = 49.2 bits (112), Expect = 2e-05
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++L+ I + L A RR + +A G+ LPG G
Sbjct: 225 LRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAGEALRRVMECLASGILLPGGPG 282
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDI---SL 198
L DPCE + A LR+ A G VL + P K S
Sbjct: 283 LHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSW 342
Query: 197 EITVWDGVVVSPLAPAYND 141
+T +G S L + D
Sbjct: 343 SVTDKEGAGSSALKRPFED 361
>AK002169-1|BAA92120.1| 490|Homo sapiens spermatid perinuclear
RNA-binding protein. protein.
Length = 490
Score = 49.2 bits (112), Expect = 2e-05
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++L+ I + L A RR + +A G+ LPG G
Sbjct: 43 LRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAGEALRRVMECLASGILLPGGPG 100
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDI---SL 198
L DPCE + A LR+ A G VL + P K S
Sbjct: 101 LHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSW 160
Query: 197 EITVWDGVVVSPLAPAYND 141
+T +G S L + D
Sbjct: 161 SVTDKEGAGSSALKRPFED 179
>AF333337-1|AAK20832.1| 673|Homo sapiens spermatid perinuclear
RNA-binding protein protein.
Length = 673
Score = 49.2 bits (112), Expect = 2e-05
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++L+ I + L A RR + +A G+ LPG G
Sbjct: 226 LRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAGEALRRVMECLASGILLPGGPG 283
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEGGKDI---SL 198
L DPCE + A LR+ A G VL + P K S
Sbjct: 284 LHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSW 343
Query: 197 EITVWDGVVVSPLAPAYND 141
+T +G S L + D
Sbjct: 344 SVTDKEGAGSSALKRPFED 362
>X98264-1|CAA66917.1| 440|Homo sapiens M-phase phosphoprotein 4
protein.
Length = 440
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 350
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 351 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 381
>U10324-1|AAA20994.1| 671|Homo sapiens NF90 protein protein.
Length = 671
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 234 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 291
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 292 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 351
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 352 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 382
>BC064836-1|AAH64836.1| 706|Homo sapiens ILF3 protein protein.
Length = 706
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 350
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 351 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 381
>AJ271746-1|CAC01406.1| 690|Homo sapiens double-stranded RNA
binding nuclear protein DRBP76 delta protein.
Length = 690
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 350
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 351 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 381
>AJ271745-1|CAC01405.1| 702|Homo sapiens double-stranded RNA
binding nuclear protein DRBP76 protein.
Length = 702
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 350
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 351 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 381
>AJ271744-1|CAC01404.1| 564|Homo sapiens DRBP76 alpha protein.
Length = 564
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 99 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 156
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 157 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 216
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 217 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 247
>AF320247-1|AAK07425.1| 894|Homo sapiens 110 kDa NFAR protein
protein.
Length = 894
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 350
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 351 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 381
>AF320244-1|AAK07424.1| 702|Homo sapiens 90 kDa NFAR protein
protein.
Length = 702
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 350
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 351 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 381
>AF202445-3|AAF82686.1| 515|Homo sapiens dsRNA binding protein
NFAR-1/DRB76 protein.
Length = 515
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 46 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 103
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 104 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 163
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 164 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 194
>AF202445-2|AAF82685.1| 709|Homo sapiens dsRNA binding protein
NFAR-2/MPP4 protein.
Length = 709
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 46 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 103
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 104 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 163
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 164 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 194
>AF202445-1|AAF82687.1| 576|Homo sapiens dsRNA binding protein
TCP-80 isoform protein.
Length = 576
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 46 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 103
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 104 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 163
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 164 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 194
>AF167570-1|AAD51099.1| 894|Homo sapiens nuclear factor associated
with dsRNA NFAR-2 protein.
Length = 894
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 350
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 351 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 381
>AF167569-1|AAD51098.1| 702|Homo sapiens nuclear factor associated
with dsRNA NFAR-1 protein.
Length = 702
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 350
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 351 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 381
>AF141870-1|AAD37575.1| 764|Homo sapiens translational control
protein 80 protein.
Length = 764
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 350
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 351 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 381
>AB209062-1|BAD92299.1| 450|Homo sapiens interleukin enhancer
binding factor 3 isoform c variant protein.
Length = 450
Score = 48.8 bits (111), Expect = 2e-05
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 242 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 299
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQPFEG--GKDISLE 195
+ DPCE + A LR+ A G VLG+ P K E
Sbjct: 300 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNE 359
Query: 194 ITVWDGVVVSPLAPAYNDSP--EPMDTDDKEE 105
V D V P + Y +P PM+ D +E+
Sbjct: 360 NPV-DYTVQIPPSTTYAITPMKRPMEEDGEEK 390
>BC048314-1|AAH48314.1| 351|Homo sapiens ILF3 protein protein.
Length = 351
Score = 46.8 bits (106), Expect = 9e-05
Identities = 32/108 (29%), Positives = 46/108 (42%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C+R PL W ++LL I + + A RR L +A G+ +P +G
Sbjct: 233 LRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEALRRVLECLASGIVMPDGSG 290
Query: 368 LPDPCEAAHSRAHXXXXXXXXXXXXXXXXXXLRVVARGGHLYVLGLQP 225
+ DPCE + A LR+ A G VLG+ P
Sbjct: 291 IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDP 338
>BC062986-1|AAH62986.1| 606|Homo sapiens ZFR protein protein.
Length = 606
Score = 40.7 bits (91), Expect = 0.006
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C R W ++LL I + Q+ P A RR ++ G+ L G G
Sbjct: 461 LRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQS-P-GDALRRVFECISSGIILKGSPG 518
Query: 368 LPDPCE 351
L DPCE
Sbjct: 519 LLDPCE 524
Score = 30.7 bits (66), Expect = 6.6
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 672 KIEPDVHLDYKVISSHLAAIRHSRWFEENAHH-SSIKVLIRL 550
K PDV LD + LAA+RH++WF+ A+ S ++IR+
Sbjct: 420 KDPPDV-LDRQKCLDALAALRHAKWFQARANGLQSCVIIIRI 460
>BC051893-1|AAH51893.1| 631|Homo sapiens ZFR protein protein.
Length = 631
Score = 40.7 bits (91), Expect = 0.006
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C R W ++LL I + Q+ P A RR ++ G+ L G G
Sbjct: 486 LRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQS-P-GDALRRVFECISSGIILKGSPG 543
Query: 368 LPDPCE 351
L DPCE
Sbjct: 544 LLDPCE 549
Score = 30.7 bits (66), Expect = 6.6
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 672 KIEPDVHLDYKVISSHLAAIRHSRWFEENAHH-SSIKVLIRL 550
K PDV LD + LAA+RH++WF+ A+ S ++IR+
Sbjct: 445 KDPPDV-LDRQKCLDALAALRHAKWFQARANGLQSCVIIIRI 485
>AK025481-1|BAB15147.1| 214|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21828 fis, clone HEP01453. ).
Length = 214
Score = 40.7 bits (91), Expect = 0.006
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C R W ++LL I + Q+ P A RR ++ G+ L G G
Sbjct: 69 LRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQS-P-GDALRRVFECISSGIILKGSPG 126
Query: 368 LPDPCE 351
L DPCE
Sbjct: 127 LLDPCE 132
Score = 30.7 bits (66), Expect = 6.6
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 672 KIEPDVHLDYKVISSHLAAIRHSRWFEENAHH-SSIKVLIRL 550
K PDV LD + LAA+RH++WF+ A+ S ++IR+
Sbjct: 28 KDPPDV-LDRQKCLDALAALRHAKWFQARANGLQSCVIIIRI 68
>AJ314790-1|CAC40818.1| 1057|Homo sapiens putative zinc finger protein
protein.
Length = 1057
Score = 40.7 bits (91), Expect = 0.006
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C R W ++LL I + Q+ P A RR ++ G+ L G G
Sbjct: 908 LRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQS-P-GDALRRVFECISSGIILKGSPG 965
Query: 368 LPDPCE 351
L DPCE
Sbjct: 966 LLDPCE 971
>AF100742-1|AAD40385.1| 418|Homo sapiens M-phase phosphoprotein
homolog protein.
Length = 418
Score = 40.7 bits (91), Expect = 0.006
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C R W ++LL I + Q+ P A RR ++ G+ L G G
Sbjct: 273 LRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQS-P-GDALRRVFECISSGIILKGSPG 330
Query: 368 LPDPCE 351
L DPCE
Sbjct: 331 LLDPCE 336
Score = 30.7 bits (66), Expect = 6.6
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 672 KIEPDVHLDYKVISSHLAAIRHSRWFEENAHH-SSIKVLIRL 550
K PDV LD + LAA+RH++WF+ A+ S ++IR+
Sbjct: 232 KDPPDV-LDRQKCLDALAALRHAKWFQARANGLQSCVIIIRI 272
>Z74616-1|CAA98969.1| 1366|Homo sapiens prepro-alpha2(I) collagen
protein.
Length = 1366
Score = 37.1 bits (82), Expect = 0.076
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = -3
Query: 459 PSASGLTHQRGI--PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A+G +G P + G+ PAG RG AGP P
Sbjct: 102 PGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGP------PGKAGEDGHPGKPGRPGE 155
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLP 163
V GARG P PG P +G +GH G G+ + G P
Sbjct: 156 RGVVGPQGARGFPGTPGLPGFKGIRGH-NGLDGLKGQPGAP 195
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMP 430
P GPA PR PAG + P + R G P
Sbjct: 1044 PGSVGPAGPRGPAGPSGPAGKDGRTGHP 1071
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGAR 484
P +TGPA R PAG PP + G P RP G GAR
Sbjct: 123 PGQTGPAGARGPAG---PPGKAGEDGHPGKPGRPGERGVVGPQGAR 165
>Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V)
protein.
Length = 1496
Score = 37.1 bits (82), Expect = 0.076
Identities = 29/89 (32%), Positives = 32/89 (35%)
Frame = -3
Query: 423 PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPV 244
PP D G + P G RG GP P A GARG P
Sbjct: 238 PPGEPGDPGPMGPIGSRGPEGP------PGKPGEDGEPGRNGNPGEVGFAGSPGARGFPG 291
Query: 243 RPGSPALRGRQGHILGDHGVGRRGGLPAS 157
PG P L+G +GH G G G P S
Sbjct: 292 APGLPGLKGHRGH-KGLEGPKGEVGAPGS 319
>Y00724-1|CAA68709.1| 765|Homo sapiens protein ( Human mRNA for
prepro-alpha2(I) collagen (COL1A2). ).
Length = 765
Score = 37.1 bits (82), Expect = 0.076
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = -3
Query: 459 PSASGLTHQRGI--PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A+G +G P + G+ PAG RG AGP P
Sbjct: 102 PGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGP------PGKAGEDGHPGKPGRPGE 155
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLP 163
V GARG P PG P +G +GH G G+ + G P
Sbjct: 156 RGVVGPQGARGFPGTPGLPGFKGIRGH-NGLDGLKGQPGAP 195
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGAR 484
P +TGPA R PAG PP + G P RP G GAR
Sbjct: 123 PGQTGPAGARGPAG---PPGKAGEDGHPGKPGRPGERGVVGPQGAR 165
>J04478-1|AAA51859.1| 463|Homo sapiens COL5A2 protein.
Length = 463
Score = 37.1 bits (82), Expect = 0.076
Identities = 29/89 (32%), Positives = 32/89 (35%)
Frame = -3
Query: 423 PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPV 244
PP D G + P G RG GP P A GARG P
Sbjct: 238 PPGEPGDPGPMGPIGSRGPEGP------PGKPGEDGEPGRNGNPGEVGFAGSPGARGFPG 291
Query: 243 RPGSPALRGRQGHILGDHGVGRRGGLPAS 157
PG P L+G +GH G G G P S
Sbjct: 292 APGLPGLKGHRGH-KGLEGPKGEVGAPGS 319
>J03464-1|AAB59374.1| 1366|Homo sapiens COL1A2 protein.
Length = 1366
Score = 37.1 bits (82), Expect = 0.076
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = -3
Query: 459 PSASGLTHQRGI--PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A+G +G P + G+ PAG RG AGP P
Sbjct: 102 PGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGP------PGKAGEDGHPGKPGRPGE 155
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLP 163
V GARG P PG P +G +GH G G+ + G P
Sbjct: 156 RGVVGPQGARGFPGTPGLPGFKGIRGH-NGLDGLKGQPGAP 195
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMP 430
P GPA PR PAG + P + R G P
Sbjct: 1044 PGSVGPAGPRGPAGPSGPAGKDGRTGHP 1071
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGAR 484
P +TGPA R PAG PP + G P RP G GAR
Sbjct: 123 PGQTGPAGARGPAG---PPGKAGEDGHPGKPGRPGERGVVGPQGAR 165
>BC086874-1|AAH86874.1| 1139|Homo sapiens COL5A2 protein protein.
Length = 1139
Score = 37.1 bits (82), Expect = 0.076
Identities = 29/89 (32%), Positives = 32/89 (35%)
Frame = -3
Query: 423 PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPV 244
PP D G + P G RG GP P A GARG P
Sbjct: 55 PPGEPGDPGPMGPIGSRGPEGP------PGKPGEDGEPGRNGNPGEVGFAGSPGARGFPG 108
Query: 243 RPGSPALRGRQGHILGDHGVGRRGGLPAS 157
PG P L+G +GH G G G P S
Sbjct: 109 APGLPGLKGHRGH-KGLEGPKGEVGAPGS 136
Score = 31.5 bits (68), Expect = 3.8
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Frame = -3
Query: 423 PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPV 244
P + D G V P G G G P + G++G P
Sbjct: 142 PTGPMGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPG 201
Query: 243 RPGSPALRGRQGHILGDHGV-GRRGGL 166
RPG P L G +G + G+ GV G G L
Sbjct: 202 RPGEPGLPGARG-LTGNPGVQGPEGKL 227
>BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha 2
protein.
Length = 1366
Score = 37.1 bits (82), Expect = 0.076
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = -3
Query: 459 PSASGLTHQRGI--PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A+G +G P + G+ PAG RG AGP P
Sbjct: 102 PGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGP------PGKAGEDGHPGKPGRPGE 155
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLP 163
V GARG P PG P +G +GH G G+ + G P
Sbjct: 156 RGVVGPQGARGFPGTPGLPGFKGIRGH-NGLDGLKGQPGAP 195
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMP 430
P GPA PR PAG + P + R G P
Sbjct: 1044 PGSVGPAGPRGPAGPSGPAGKDGRTGHP 1071
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGAR 484
P +TGPA R PAG PP + G P RP G GAR
Sbjct: 123 PGQTGPAGARGPAG---PPGKAGEDGHPGKPGRPGERGVVGPQGAR 165
>BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha 2
protein.
Length = 1366
Score = 37.1 bits (82), Expect = 0.076
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = -3
Query: 459 PSASGLTHQRGI--PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A+G +G P + G+ PAG RG AGP P
Sbjct: 102 PGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGP------PGKAGEDGHPGKPGRPGE 155
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLP 163
V GARG P PG P +G +GH G G+ + G P
Sbjct: 156 RGVVGPQGARGFPGTPGLPGFKGIRGH-NGLDGLKGQPGAP 195
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMP 430
P GPA PR PAG + P + R G P
Sbjct: 1044 PGSVGPAGPRGPAGPSGPAGKDGRTGHP 1071
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGAR 484
P +TGPA R PAG PP + G P RP G GAR
Sbjct: 123 PGQTGPAGARGPAG---PPGKAGEDGHPGKPGRPGERGVVGPQGAR 165
>AY016295-1|AAL13166.1| 1347|Homo sapiens type V preprocollagen
alpha 2 chain protein.
Length = 1347
Score = 37.1 bits (82), Expect = 0.076
Identities = 29/89 (32%), Positives = 32/89 (35%)
Frame = -3
Query: 423 PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPV 244
PP D G + P G RG GP P A GARG P
Sbjct: 86 PPGEPGDPGPMGPIGSRGPEGP------PGKPGEDGEPGRNGNPGEVGFAGSPGARGFPG 139
Query: 243 RPGSPALRGRQGHILGDHGVGRRGGLPAS 157
PG P L+G +GH G G G P S
Sbjct: 140 APGLPGLKGHRGH-KGLEGPKGEVGAPGS 167
Score = 31.1 bits (67), Expect = 5.0
Identities = 32/99 (32%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P G RG P V G P G RGA G RG P
Sbjct: 345 PGEEGKRGPRGDPGTVGPPG----PVGERGAPGN-RG--FPGSDGLPGPKGAQGERGPVG 397
Query: 279 VASRGGARGSPVRPGSPALRGRQGHILGDHGV-GRRGGL 166
+ G++G P RPG P L G +G + G+ GV G G L
Sbjct: 398 SSGPKGSQGDPGRPGEPGLPGARG-LTGNPGVQGPEGKL 435
>AF004877-1|AAB93981.1| 1366|Homo sapiens pro-alpha 2(I) collagen
protein.
Length = 1366
Score = 37.1 bits (82), Expect = 0.076
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = -3
Query: 459 PSASGLTHQRGI--PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A+G +G P + G+ PAG RG AGP P
Sbjct: 102 PGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGP------PGKAGEDGHPGKPGRPGE 155
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLP 163
V GARG P PG P +G +GH G G+ + G P
Sbjct: 156 RGVVGPQGARGFPGTPGLPGFKGIRGH-NGLDGLKGQPGAP 195
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMP 430
P GPA PR PAG + P + R G P
Sbjct: 1044 PGSVGPAGPRGPAGPSGPAGKDGRTGHP 1071
Score = 30.3 bits (65), Expect = 8.8
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGAR 484
P +TGPA R PAG PP + G P RP G GAR
Sbjct: 123 PGQTGPAGARGPAG---PPGKAGEDGHPGKPGRPGERGVVGPQGAR 165
>AB209045-1|BAD92282.1| 1502|Homo sapiens alpha 2 type V collagen
preproprotein variant protein.
Length = 1502
Score = 37.1 bits (82), Expect = 0.076
Identities = 29/89 (32%), Positives = 32/89 (35%)
Frame = -3
Query: 423 PPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPV 244
PP D G + P G RG GP P A GARG P
Sbjct: 241 PPGEPGDPGPMGPIGSRGPEGP------PGKPGEDGEPGRNGNPGEVGFAGSPGARGFPG 294
Query: 243 RPGSPALRGRQGHILGDHGVGRRGGLPAS 157
PG P L+G +GH G G G P S
Sbjct: 295 APGLPGLKGHRGH-KGLEGPKGEVGAPGS 322
Score = 31.1 bits (67), Expect = 5.0
Identities = 32/99 (32%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P G RG P V G P G RGA G RG P
Sbjct: 500 PGEEGKRGPRGDPGTVGPPG----PVGERGAPGN-RG--FPGSDGLPGPKGAQGERGPVG 552
Query: 279 VASRGGARGSPVRPGSPALRGRQGHILGDHGV-GRRGGL 166
+ G++G P RPG P L G +G + G+ GV G G L
Sbjct: 553 SSGPKGSQGDPGRPGEPGLPGARG-LTGNPGVQGPEGKL 590
>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
protein.
Length = 1078
Score = 36.7 bits (81), Expect = 0.10
Identities = 24/78 (30%), Positives = 27/78 (34%)
Frame = -3
Query: 405 DGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPA 226
D G PAG GA GP P + G G+P PGSP
Sbjct: 916 DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG 975
Query: 225 LRGRQGHILGDHGVGRRG 172
G+QG I G RG
Sbjct: 976 PAGQQGAIGSPGPAGPRG 993
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 collagen
protein.
Length = 1466
Score = 36.7 bits (81), Expect = 0.10
Identities = 24/78 (30%), Positives = 27/78 (34%)
Frame = -3
Query: 405 DGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPA 226
D G PAG GA GP P + G G+P PGSP
Sbjct: 1063 DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG 1122
Query: 225 LRGRQGHILGDHGVGRRG 172
G+QG I G RG
Sbjct: 1123 PAGQQGAIGSPGPAGPRG 1140
>X06700-1|CAA29886.1| 517|Homo sapiens alpha1 (III) collagen
protein.
Length = 517
Score = 36.7 bits (81), Expect = 0.10
Identities = 24/78 (30%), Positives = 27/78 (34%)
Frame = -3
Query: 405 DGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPA 226
D G PAG GA GP P + G G+P PGSP
Sbjct: 114 DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG 173
Query: 225 LRGRQGHILGDHGVGRRG 172
G+QG I G RG
Sbjct: 174 PAGQQGAIGSPGPAGPRG 191
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 36.7 bits (81), Expect = 0.10
Identities = 24/78 (30%), Positives = 27/78 (34%)
Frame = -3
Query: 405 DGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPA 226
D G PAG GA GP P + G G+P PGSP
Sbjct: 1063 DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG 1122
Query: 225 LRGRQGHILGDHGVGRRG 172
G+QG I G RG
Sbjct: 1123 PAGQQGAIGSPGPAGPRG 1140
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 36.7 bits (81), Expect = 0.10
Identities = 24/78 (30%), Positives = 27/78 (34%)
Frame = -3
Query: 405 DGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPA 226
D G PAG GA GP P + G G+P PGSP
Sbjct: 1063 DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG 1122
Query: 225 LRGRQGHILGDHGVGRRG 172
G+QG I G RG
Sbjct: 1123 PAGQQGAIGSPGPAGPRG 1140
>AB029009-1|BAA83038.1| 902|Homo sapiens KIAA1086 protein protein.
Length = 902
Score = 36.3 bits (80), Expect = 0.13
Identities = 23/66 (34%), Positives = 29/66 (43%)
Frame = -1
Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
LRD+C R L W ++LL + + L A RR L +A G L G
Sbjct: 758 LRDLCRRVPTWGALPAWAMELLVEKAVSS--AAGPLGPGDAVRRVLECVATGTLLTDGPG 815
Query: 368 LPDPCE 351
L DPCE
Sbjct: 816 LQDPCE 821
>X01655-1|CAA25821.1| 132|Homo sapiens protein ( Human mRNA for
alpha 1 (III) collagen fragment (aa 892-1023). ).
Length = 132
Score = 35.1 bits (77), Expect = 0.31
Identities = 23/76 (30%), Positives = 26/76 (34%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALR 220
G PAG GA GP P + G G+P PGSP
Sbjct: 1 GESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPA 60
Query: 219 GRQGHILGDHGVGRRG 172
G+QG I G RG
Sbjct: 61 GQQGAIGSPGPAGPRG 76
>AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 34.3 bits (75), Expect = 0.54
Identities = 30/108 (27%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG-----GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXX 295
P G+T + G P R G G GL+G GP G P
Sbjct: 549 PGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGY 608
Query: 294 XXXTDVASRG--GARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPAS 157
+ +G G G P PG P +G G I+ G GLP S
Sbjct: 609 GPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGS 656
>AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 34.3 bits (75), Expect = 0.54
Identities = 30/108 (27%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG-----GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXX 295
P G+T + G P R G G GL+G GP G P
Sbjct: 549 PGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGY 608
Query: 294 XXXTDVASRG--GARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPAS 157
+ +G G G P PG P +G G I+ G GLP S
Sbjct: 609 GPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGS 656
>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
alpha-1 type II collagen. ).
Length = 1418
Score = 33.9 bits (74), Expect = 0.71
Identities = 38/111 (34%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG--GRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXXXXXXX 289
P SG Q+G P G G V P GL G AG P R G+ P
Sbjct: 929 PGPSGEPGQQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS-PGADGPPGRDGAAGVKG 987
Query: 288 XTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL----PASAR 151
GA G+P PGSP G G GD G G +G + PA AR
Sbjct: 988 DRGETGAVGAPGAPGPPGSPGPAGPTGK-QGDRGEAGAQGPMGPSGPAGAR 1037
Score = 32.7 bits (71), Expect = 1.6
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Frame = -3
Query: 510 PDAVDDRSARA-PLHHEQPSASGLTHQRGIPPRVVSDG--GRVVPAGLRGAAGPVRGGAL 340
P V R R P P A GL RG+P +DG G PAG GA GP +
Sbjct: 623 PGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 682
Query: 339 PXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALRGRQG 208
P DV + G G+P + G L G G
Sbjct: 683 P--GERGAAGIAGPKGDRGDVGEK-GPEGAPGKDGGRGLTGPIG 723
Score = 30.7 bits (66), Expect = 6.6
Identities = 22/64 (34%), Positives = 26/64 (40%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALR 220
G + P G RGA G RG P + +A GA G P RPG P L
Sbjct: 432 GPIGPPGERGAPGN-RG--FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLP 488
Query: 219 GRQG 208
G +G
Sbjct: 489 GARG 492
>X13783-1|CAA32030.1| 714|Homo sapiens alpha-1 type 2 collagen (714
AA) protein.
Length = 714
Score = 33.9 bits (74), Expect = 0.71
Identities = 38/111 (34%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG--GRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXXXXXXX 289
P SG Q+G P G G V P GL G AG P R G+ P
Sbjct: 498 PGPSGEPGQQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS-PGADGPPGRDGAAGVKG 556
Query: 288 XTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL----PASAR 151
GA G+P PGSP G G GD G G +G + PA AR
Sbjct: 557 DRGETGAVGAPGAPGPPGSPGPAGPTGK-QGDRGEAGAQGPMGPSGPAGAR 606
Score = 33.1 bits (72), Expect = 1.2
Identities = 32/104 (30%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Frame = -3
Query: 510 PDAVDDRSARA-PLHHEQPSASGLTHQRGIPPRVVSDG--GRVVPAGLRGAAGPVRGGAL 340
P V R R P P A GL RG+P +DG G PAG GA GP +
Sbjct: 192 PGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 251
Query: 339 PXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALRGRQG 208
P DV + G G+P + G+ L G G
Sbjct: 252 P--GERGAAGIAGPKGDRGDVGEK-GPEGAPGKDGARGLTGPIG 292
Score = 30.7 bits (66), Expect = 6.6
Identities = 22/64 (34%), Positives = 26/64 (40%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALR 220
G + P G RGA G RG P + +A GA G P RPG P L
Sbjct: 1 GPIGPPGERGAPGN-RG--FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLP 57
Query: 219 GRQG 208
G +G
Sbjct: 58 GARG 61
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 33.9 bits (74), Expect = 0.71
Identities = 38/119 (31%), Positives = 42/119 (35%), Gaps = 5/119 (4%)
Frame = -3
Query: 549 SPGHVFSALRTRTPDAVDDRSARAPLHHE-QPSASGLTHQRGIPPRVVSDGGRVVPAGLR 373
+PG S R +P A DR P P A G G P D G PAG
Sbjct: 1017 APGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVG-PAGKSGDRGETGPAGPA 1075
Query: 372 GAAGPV--RGGALPXXXXXXXXXXXXXXXXXTDVASRG--GARGSPVRPGSPALRGRQG 208
G GPV RG A P RG G +G P PGSP +G G
Sbjct: 1076 GPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK-GHRGFSGLQGPPGPPGSPGEQGPSG 1133
Score = 30.3 bits (65), Expect = 8.8
Identities = 28/102 (27%), Positives = 33/102 (32%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P A G+ +G P G P G G AG LP T
Sbjct: 496 PGADGVAGPKG-PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 554
Query: 279 VASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPASA 154
G G P PG P RG+ G ++G G G P A
Sbjct: 555 PPGPAGQDGRPGPPGPPGARGQAG-VMGFPGPKGAAGEPGKA 595
Score = 30.3 bits (65), Expect = 8.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 359 GPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGARAD 490
GP P P G PP E+ R G P P +G G R +
Sbjct: 995 GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1038
>BC032892-1|AAH32892.1| 188|Homo sapiens LOC649305 protein protein.
Length = 188
Score = 33.9 bits (74), Expect = 0.71
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*C-SGARADLSSTASGVRVR 523
PP + PA P +P P + G R P GC C G +L + +G R
Sbjct: 106 PPESWPALPAAPKPLASPEAGMAGPGGKRTTSLPKRRGCGCCWRGEAQNLRTARTGRTCR 165
Query: 524 SAENTCPGERRINT 565
PG R++ T
Sbjct: 166 GQAGRRPGPRQVAT 179
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 33.9 bits (74), Expect = 0.71
Identities = 38/119 (31%), Positives = 42/119 (35%), Gaps = 5/119 (4%)
Frame = -3
Query: 549 SPGHVFSALRTRTPDAVDDRSARAPLHHE-QPSASGLTHQRGIPPRVVSDGGRVVPAGLR 373
+PG S R +P A DR P P A G G P D G PAG
Sbjct: 1014 APGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVG-PAGKSGDRGETGPAGPA 1072
Query: 372 GAAGPV--RGGALPXXXXXXXXXXXXXXXXXTDVASRG--GARGSPVRPGSPALRGRQG 208
G GPV RG A P RG G +G P PGSP +G G
Sbjct: 1073 GPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK-GHRGFSGLQGPPGPPGSPGEQGPSG 1130
Score = 30.3 bits (65), Expect = 8.8
Identities = 28/102 (27%), Positives = 33/102 (32%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P A G+ +G P G P G G AG LP T
Sbjct: 493 PGADGVAGPKG-PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 551
Query: 279 VASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPASA 154
G G P PG P RG+ G ++G G G P A
Sbjct: 552 PPGPAGQDGRPGPPGPPGARGQAG-VMGFPGPKGAAGEPGKA 592
Score = 30.3 bits (65), Expect = 8.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 359 GPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGARAD 490
GP P P G PP E+ R G P P +G G R +
Sbjct: 992 GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1035
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 33.9 bits (74), Expect = 0.71
Identities = 38/119 (31%), Positives = 42/119 (35%), Gaps = 5/119 (4%)
Frame = -3
Query: 549 SPGHVFSALRTRTPDAVDDRSARAPLHHE-QPSASGLTHQRGIPPRVVSDGGRVVPAGLR 373
+PG S R +P A DR P P A G G P D G PAG
Sbjct: 1020 APGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVG-PAGKSGDRGETGPAGPA 1078
Query: 372 GAAGPV--RGGALPXXXXXXXXXXXXXXXXXTDVASRG--GARGSPVRPGSPALRGRQG 208
G GPV RG A P RG G +G P PGSP +G G
Sbjct: 1079 GPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK-GHRGFSGLQGPPGPPGSPGEQGPSG 1136
Score = 30.3 bits (65), Expect = 8.8
Identities = 28/102 (27%), Positives = 33/102 (32%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P A G+ +G P G P G G AG LP T
Sbjct: 499 PGADGVAGPKG-PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 557
Query: 279 VASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPASA 154
G G P PG P RG+ G ++G G G P A
Sbjct: 558 PPGPAGQDGRPGPPGPPGARGQAG-VMGFPGPKGAAGEPGKA 598
Score = 30.3 bits (65), Expect = 8.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 359 GPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGARAD 490
GP P P G PP E+ R G P P +G G R +
Sbjct: 998 GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1041
>AF036130-2|AAC33528.1| 678|Homo sapiens collagen type IX alpha I
chain, short form protein.
Length = 678
Score = 33.5 bits (73), Expect = 0.94
Identities = 35/109 (32%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = -3
Query: 489 SARAPLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXX 310
S AP Q SG Q+G P V G R +P G RG GPV LP
Sbjct: 347 STGAPGKPGQMGNSGKPGQQGPPGEVGPRGPRGLP-GSRGELGPVGSPGLPGKLGSLGSP 405
Query: 309 XXXXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL 166
+ G RG G P +G QG G+ G G RG L
Sbjct: 406 GLPGLPGPPGLPGMKGDRGV---VGEPGPKGEQG-ASGEEGEAGERGEL 450
Score = 33.1 bits (72), Expect = 1.2
Identities = 31/97 (31%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Frame = -3
Query: 480 APLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXX 304
AP P A GLT G P + S G + P G+ G+ G P RG +P
Sbjct: 72 APGKPGTPGADGLTGPDGSPGSIGSKGQKGEP-GVPGSRGFPGRG--IPGPPGPPGTAGL 128
Query: 303 XXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGD 193
G RG P PG P RG G GD
Sbjct: 129 PGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGD 165
>AF036130-1|AAC33527.1| 921|Homo sapiens collagen type IX alpha I
chain, long form protein.
Length = 921
Score = 33.5 bits (73), Expect = 0.94
Identities = 35/109 (32%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = -3
Query: 489 SARAPLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXX 310
S AP Q SG Q+G P V G R +P G RG GPV LP
Sbjct: 590 STGAPGKPGQMGNSGKPGQQGPPGEVGPRGPRGLP-GSRGELGPVGSPGLPGKLGSLGSP 648
Query: 309 XXXXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL 166
+ G RG G P +G QG G+ G G RG L
Sbjct: 649 GLPGLPGPPGLPGMKGDRGV---VGEPGPKGEQG-ASGEEGEAGERGEL 693
Score = 33.1 bits (72), Expect = 1.2
Identities = 31/97 (31%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Frame = -3
Query: 480 APLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXX 304
AP P A GLT G P + S G + P G+ G+ G P RG +P
Sbjct: 315 APGKPGTPGADGLTGPDGSPGSIGSKGQKGEP-GVPGSRGFPGRG--IPGPPGPPGTAGL 371
Query: 303 XXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGD 193
G RG P PG P RG G GD
Sbjct: 372 PGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGD 408
>X65018-1|CAA46152.1| 375|Homo sapiens lung surfactant protein D
protein.
Length = 375
Score = 33.1 bits (72), Expect = 1.2
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT-DVASRGGARGSPVRPGSPAL 223
G V G++G+AG RG A P A G +GSP G P L
Sbjct: 145 GEVGAPGMQGSAG-ARGLAGPKGERGVPGERGVPGNAGAAGSAGAMGPQGSPGARGPPGL 203
Query: 222 RGRQGHILGDHGVGRRGGLPASARLQ 145
+G +G I GD G GLP A L+
Sbjct: 204 KGDKG-IPGDKGAKGESGLPDVASLR 228
>X54412-1|CAA38276.1| 931|Homo sapiens protein ( Human mRNA for
alpha1(IX) collagen (long form). ).
Length = 931
Score = 33.1 bits (72), Expect = 1.2
Identities = 31/97 (31%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Frame = -3
Query: 480 APLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXX 304
AP P A GLT G P + S G + P G+ G+ G P RG +P
Sbjct: 315 APGKPGTPGADGLTGPDGSPGSIGSKGQKGEP-GVPGSRGFPGRG--IPGPPGPPGTAGL 371
Query: 303 XXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGD 193
G RG P PG P RG G GD
Sbjct: 372 PGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGD 408
Score = 31.9 bits (69), Expect = 2.9
Identities = 34/109 (31%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = -3
Query: 489 SARAPLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXX 310
S AP Q SG Q+G P V G + +P G RG GPV LP
Sbjct: 590 STGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP-GSRGELGPVGSPGLPGKLGSLGSP 648
Query: 309 XXXXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL 166
+ G RG G P +G QG G+ G G RG L
Sbjct: 649 GLPGLPGPPGLPGMKGDRGV---VGEPGPKGEQG-ASGEEGEAGERGEL 693
>L05485-1|AAB59450.1| 375|Homo sapiens surfactant protein D
protein.
Length = 375
Score = 33.1 bits (72), Expect = 1.2
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT-DVASRGGARGSPVRPGSPAL 223
G V G++G+AG RG A P A G +GSP G P L
Sbjct: 145 GEVGAPGMQGSAG-ARGLAGPKGERGVPGERGVPGNTGAAGSAGAMGPQGSPGARGPPGL 203
Query: 222 RGRQGHILGDHGVGRRGGLPASARLQ 145
+G +G I GD G GLP A L+
Sbjct: 204 KGDKG-IPGDKGAKGESGLPDVASLR 228
>CR541948-1|CAG46746.1| 375|Homo sapiens SFTPD protein.
Length = 375
Score = 33.1 bits (72), Expect = 1.2
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT-DVASRGGARGSPVRPGSPAL 223
G V G++G+AG RG A P A G +GSP G P L
Sbjct: 145 GEVGAPGMQGSAG-ARGLAGPKGERGVPGERGVPGNAGAAGSAGAMGPQGSPGARGPPGL 203
Query: 222 RGRQGHILGDHGVGRRGGLPASARLQ 145
+G +G I GD G GLP A L+
Sbjct: 204 KGDKG-IPGDKGAKGESGLPDVASLR 228
>BC063646-1|AAH63646.1| 678|Homo sapiens collagen, type IX, alpha 1
protein.
Length = 678
Score = 33.1 bits (72), Expect = 1.2
Identities = 31/97 (31%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Frame = -3
Query: 480 APLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXX 304
AP P A GLT G P + S G + P G+ G+ G P RG +P
Sbjct: 72 APGKPGTPGADGLTGPDGSPGSIGSKGQKGEP-GVPGSRGFPGRG--IPGPPGPPGTAGL 128
Query: 303 XXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGD 193
G RG P PG P RG G GD
Sbjct: 129 PGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGD 165
Score = 31.9 bits (69), Expect = 2.9
Identities = 34/109 (31%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = -3
Query: 489 SARAPLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXX 310
S AP Q SG Q+G P V G + +P G RG GPV LP
Sbjct: 347 STGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP-GSRGELGPVGSPGLPGKLGSLGSP 405
Query: 309 XXXXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL 166
+ G RG G P +G QG G+ G G RG L
Sbjct: 406 GLPGLPGPPGLPGMKGDRGV---VGEPGPKGEQG-ASGEEGEAGERGEL 450
>BC022318-1|AAH22318.1| 375|Homo sapiens surfactant,
pulmonary-associated protein D protein.
Length = 375
Score = 33.1 bits (72), Expect = 1.2
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT-DVASRGGARGSPVRPGSPAL 223
G V G++G+AG RG A P A G +GSP G P L
Sbjct: 145 GEVGAPGMQGSAG-ARGLAGPKGERGVPGERGVPGNTGAAGSAGAMGPQGSPGARGPPGL 203
Query: 222 RGRQGHILGDHGVGRRGGLPASARLQ 145
+G +G I GD G GLP A L+
Sbjct: 204 KGDKG-IPGDKGAKGESGLPDVASLR 228
>AY216721-1|AAO22991.1| 375|Homo sapiens surfactant,
pulmonary-associated protein D protein.
Length = 375
Score = 33.1 bits (72), Expect = 1.2
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT-DVASRGGARGSPVRPGSPAL 223
G V G++G+AG RG A P A G +GSP G P L
Sbjct: 145 GEVGAPGMQGSAG-ARGLAGPKGERGVPGERGVPGNAGAAGSAGAMGPQGSPGARGPPGL 203
Query: 222 RGRQGHILGDHGVGRRGGLPASARLQ 145
+G +G I GD G GLP A L+
Sbjct: 204 KGDKG-IPGDKGAKGESGLPDVASLR 228
>AL512662-3|CAI14436.1| 375|Homo sapiens surfactant,
pulmonary-associated protein D protein.
Length = 375
Score = 33.1 bits (72), Expect = 1.2
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT-DVASRGGARGSPVRPGSPAL 223
G V G++G+AG RG A P A G +GSP G P L
Sbjct: 145 GEVGAPGMQGSAG-ARGLAGPKGERGVPGERGVPGNTGAAGSAGAMGPQGSPGARGPPGL 203
Query: 222 RGRQGHILGDHGVGRRGGLPASARLQ 145
+G +G I GD G GLP A L+
Sbjct: 204 KGDKG-IPGDKGAKGESGLPDVASLR 228
>AL160262-4|CAI42321.1| 921|Homo sapiens collagen type IX alpha 1
protein.
Length = 921
Score = 33.1 bits (72), Expect = 1.2
Identities = 31/97 (31%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Frame = -3
Query: 480 APLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXX 304
AP P A GLT G P + S G + P G+ G+ G P RG +P
Sbjct: 315 APGKPGTPGADGLTGPDGSPGSIGSKGQKGEP-GVPGSRGFPGRG--IPGPPGPPGTAGL 371
Query: 303 XXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGD 193
G RG P PG P RG G GD
Sbjct: 372 PGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGD 408
Score = 31.9 bits (69), Expect = 2.9
Identities = 34/109 (31%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = -3
Query: 489 SARAPLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXX 310
S AP Q SG Q+G P V G + +P G RG GPV LP
Sbjct: 590 STGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP-GSRGELGPVGSPGLPGKLGSLGSP 648
Query: 309 XXXXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL 166
+ G RG G P +G QG G+ G G RG L
Sbjct: 649 GLPGLPGPPGLPGMKGDRGV---VGEPGPKGEQG-ASGEEGEAGERGEL 693
>AL160262-3|CAI42320.1| 448|Homo sapiens collagen type IX alpha 1
protein.
Length = 448
Score = 33.1 bits (72), Expect = 1.2
Identities = 31/97 (31%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Frame = -3
Query: 480 APLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXX 304
AP P A GLT G P + S G + P G+ G+ G P RG +P
Sbjct: 72 APGKPGTPGADGLTGPDGSPGSIGSKGQKGEP-GVPGSRGFPGRG--IPGPPGPPGTAGL 128
Query: 303 XXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGD 193
G RG P PG P RG G GD
Sbjct: 129 PGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGD 165
Score = 31.1 bits (67), Expect = 5.0
Identities = 33/107 (30%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Frame = -3
Query: 489 SARAPLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXX 310
S AP Q SG Q+G P V G + +P G RG GPV LP
Sbjct: 347 STGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP-GSRGELGPVGSPGLPGKLGSLGSP 405
Query: 309 XXXXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRG 172
+ G RG G P +G QG G+ G G RG
Sbjct: 406 GLPGLPGPPGLPGMKGDRGV---VGEPGPKGEQG-ASGEEGEAGERG 448
>AL080275-3|CAI19590.1| 921|Homo sapiens collagen type IX alpha 1
protein.
Length = 921
Score = 33.1 bits (72), Expect = 1.2
Identities = 31/97 (31%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Frame = -3
Query: 480 APLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXX 304
AP P A GLT G P + S G + P G+ G+ G P RG +P
Sbjct: 315 APGKPGTPGADGLTGPDGSPGSIGSKGQKGEP-GVPGSRGFPGRG--IPGPPGPPGTAGL 371
Query: 303 XXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGD 193
G RG P PG P RG G GD
Sbjct: 372 PGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGD 408
Score = 31.9 bits (69), Expect = 2.9
Identities = 34/109 (31%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = -3
Query: 489 SARAPLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXX 310
S AP Q SG Q+G P V G + +P G RG GPV LP
Sbjct: 590 STGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP-GSRGELGPVGSPGLPGKLGSLGSP 648
Query: 309 XXXXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL 166
+ G RG G P +G QG G+ G G RG L
Sbjct: 649 GLPGLPGPPGLPGMKGDRGV---VGEPGPKGEQG-ASGEEGEAGERGEL 693
>AL080275-2|CAI19589.1| 448|Homo sapiens collagen type IX alpha 1
protein.
Length = 448
Score = 33.1 bits (72), Expect = 1.2
Identities = 31/97 (31%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Frame = -3
Query: 480 APLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXX 304
AP P A GLT G P + S G + P G+ G+ G P RG +P
Sbjct: 72 APGKPGTPGADGLTGPDGSPGSIGSKGQKGEP-GVPGSRGFPGRG--IPGPPGPPGTAGL 128
Query: 303 XXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGD 193
G RG P PG P RG G GD
Sbjct: 129 PGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGD 165
Score = 31.1 bits (67), Expect = 5.0
Identities = 33/107 (30%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Frame = -3
Query: 489 SARAPLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXX 310
S AP Q SG Q+G P V G + +P G RG GPV LP
Sbjct: 347 STGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP-GSRGELGPVGSPGLPGKLGSLGSP 405
Query: 309 XXXXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRG 172
+ G RG G P +G QG G+ G G RG
Sbjct: 406 GLPGLPGPPGLPGMKGDRGV---VGEPGPKGEQG-ASGEEGEAGERG 448
>X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.
Length = 1160
Score = 32.7 bits (71), Expect = 1.6
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Frame = -3
Query: 510 PDAVDDRSARA-PLHHEQPSASGLTHQRGIPPRVVSDG--GRVVPAGLRGAAGPVRGGAL 340
P V R R P P A GL RG+P +DG G PAG GA GP +
Sbjct: 623 PGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 682
Query: 339 PXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALRGRQG 208
P DV + G G+P + G L G G
Sbjct: 683 P--GERGAAGIAGPKGDRGDVGEK-GPEGAPGKDGGRGLTGPIG 723
Score = 32.3 bits (70), Expect = 2.2
Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG--GRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXXXXXXX 289
P SG ++G P G G V P GL G AG P R G+ P
Sbjct: 929 PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGRQGS-PGADGPPGRDGAAGVKG 987
Query: 288 XTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL----PASAR 151
GA G+P PGSP G G GD G G +G + PA AR
Sbjct: 988 DRGETGAVGAPGTPGPPGSPGPAGPTGK-QGDRGEAGAQGPMGPSGPAGAR 1037
Score = 30.7 bits (66), Expect = 6.6
Identities = 22/64 (34%), Positives = 26/64 (40%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALR 220
G + P G RGA G RG P + +A GA G P RPG P L
Sbjct: 432 GPIGPPGERGAPGN-RG--FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLP 488
Query: 219 GRQG 208
G +G
Sbjct: 489 GARG 492
>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
protein.
Length = 1487
Score = 32.7 bits (71), Expect = 1.6
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Frame = -3
Query: 510 PDAVDDRSARA-PLHHEQPSASGLTHQRGIPPRVVSDG--GRVVPAGLRGAAGPVRGGAL 340
P V R R P P A GL RG+P +DG G PAG GA GP +
Sbjct: 692 PGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 751
Query: 339 PXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALRGRQG 208
P DV + G G+P + G L G G
Sbjct: 752 P--GERGAAGIAGPKGDRGDVGEK-GPEGAPGKDGGRGLTGPIG 792
Score = 32.3 bits (70), Expect = 2.2
Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG--GRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXXXXXXX 289
P SG ++G P G G V P GL G AG P R G+ P
Sbjct: 998 PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS-PGADGPPGRDGAAGVKG 1056
Query: 288 XTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL----PASAR 151
GA G+P PGSP G G GD G G +G + PA AR
Sbjct: 1057 DRGETGAVGAPGAPGPPGSPGPAGPTGK-QGDRGEAGAQGPMGPSGPAGAR 1106
Score = 30.7 bits (66), Expect = 6.6
Identities = 22/64 (34%), Positives = 26/64 (40%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALR 220
G + P G RGA G RG P + +A GA G P RPG P L
Sbjct: 501 GPIGPPGERGAPGN-RG--FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLP 557
Query: 219 GRQG 208
G +G
Sbjct: 558 GARG 561
>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
(primary osteoarthritis, spondyloepiphyseal dysplasi
protein.
Length = 1487
Score = 32.7 bits (71), Expect = 1.6
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Frame = -3
Query: 510 PDAVDDRSARA-PLHHEQPSASGLTHQRGIPPRVVSDG--GRVVPAGLRGAAGPVRGGAL 340
P V R R P P A GL RG+P +DG G PAG GA GP +
Sbjct: 692 PGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 751
Query: 339 PXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALRGRQG 208
P DV + G G+P + G L G G
Sbjct: 752 P--GERGAAGIAGPKGDRGDVGEK-GPEGAPGKDGGRGLTGPIG 792
Score = 32.3 bits (70), Expect = 2.2
Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG--GRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXXXXXXX 289
P SG ++G P G G V P GL G AG P R G+ P
Sbjct: 998 PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS-PGADGPPGRDGAAGVKG 1056
Query: 288 XTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL----PASAR 151
GA G+P PGSP G G GD G G +G + PA AR
Sbjct: 1057 DRGETGAVGAPGAPGPPGSPGPAGPTGK-QGDRGEAGAQGPMGPSGPAGAR 1106
Score = 30.7 bits (66), Expect = 6.6
Identities = 22/64 (34%), Positives = 26/64 (40%)
Frame = -3
Query: 399 GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALR 220
G + P G RGA G RG P + +A GA G P RPG P L
Sbjct: 501 GPIGPPGERGAPGN-RG--FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLP 557
Query: 219 GRQG 208
G +G
Sbjct: 558 GARG 561
>AY898961-1|AAX84028.1| 540|Homo sapiens type XXIII collagen
protein.
Length = 540
Score = 32.7 bits (71), Expect = 1.6
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P A G+ ++G P D G PAGL+G AG + LP +
Sbjct: 344 PGAPGIDGEKG-PKGQKGDPGEPGPAGLKGEAGEMGLSGLPGADGLKGEKGESASDSLQE 402
Query: 279 -VASRGGARGSPVRPGSPALRGRQGHILGDHGV-GRRGGLPAS 157
+A G P PG P G QG I G G+ G +G AS
Sbjct: 403 SLAQLIVEPGPPGPPGPPGPMGLQG-IQGPKGLDGAKGEKGAS 444
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/100 (27%), Positives = 33/100 (33%)
Frame = -3
Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT 283
Q A+G G PP G G RGA GP P
Sbjct: 179 QDGAAGPPGPPG-PPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKGEP 237
Query: 282 DVASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLP 163
V + G G+P +PG P +G G +G G G P
Sbjct: 238 GVPGKKGDDGTPSQPGPPGPKGEPGS-MGPRGENGVDGAP 276
>AY158895-1|AAO18361.1| 540|Homo sapiens alpha 1 type XXIII
collagen protein.
Length = 540
Score = 32.7 bits (71), Expect = 1.6
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P A G+ ++G P D G PAGL+G AG + LP +
Sbjct: 344 PGAPGIDGEKG-PKGQKGDPGEPGPAGLKGEAGEMGLSGLPGADGLKGEKGESASDSLQE 402
Query: 279 -VASRGGARGSPVRPGSPALRGRQGHILGDHGV-GRRGGLPAS 157
+A G P PG P G QG I G G+ G +G AS
Sbjct: 403 SLAQLIVEPGPPGPPGPPGPMGLQG-IQGPKGLDGAKGEKGAS 444
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/100 (27%), Positives = 33/100 (33%)
Frame = -3
Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT 283
Q A+G G PP G G RGA GP P
Sbjct: 179 QDGAAGPPGPPG-PPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKGEP 237
Query: 282 DVASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLP 163
V + G G+P +PG P +G G +G G G P
Sbjct: 238 GVPGKKGDDGTPSQPGPPGPKGEPGS-MGPRGENGVDGAP 276
>AL137461-1|CAB70749.1| 201|Homo sapiens hypothetical protein
protein.
Length = 201
Score = 32.7 bits (71), Expect = 1.6
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P A G+ ++G P D G PAGL+G AG + LP +
Sbjct: 5 PGAPGIDGEKG-PKGQKGDPGEPGPAGLKGEAGEMGLSGLPGADGLKGEKGESASDSLQE 63
Query: 279 -VASRGGARGSPVRPGSPALRGRQGHILGDHGV-GRRGGLPAS 157
+A G P PG P G QG I G G+ G +G AS
Sbjct: 64 SLAQLIVEPGPPGPPGPPGPMGLQG-IQGPKGLDGAKGEKGAS 105
>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
protein.
Length = 1690
Score = 32.3 bits (70), Expect = 2.2
Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 264 GARGSPVRPGSPALRGRQGHILGDHGV-GRRG 172
G RGSP RPG P G G GDHG+ G RG
Sbjct: 1112 GPRGSPGRPGPPGSSGPPG-CPGDHGMPGLRG 1142
>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 chain
protein.
Length = 1690
Score = 32.3 bits (70), Expect = 2.2
Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 264 GARGSPVRPGSPALRGRQGHILGDHGV-GRRG 172
G RGSP RPG P G G GDHG+ G RG
Sbjct: 1112 GPRGSPGRPGPPGSSGPPG-CPGDHGMPGLRG 1142
>AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen middle
variant protein.
Length = 1516
Score = 32.3 bits (70), Expect = 2.2
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +2
Query: 350 PRTGPAAPRSPAGTTRPPSETTRGGM--PR*WVRPDAEGCS*CSGARADLSSTASGVR-- 517
PR G P + G+ PPSE G P PDA + +G A++ + A G+R
Sbjct: 66 PRNGSTEPATAPGSPEPPSELLEDGQDTPTSAESPDAPEEN-IAGVGAEILNVAKGIRSF 124
Query: 518 VRSAENTCPGE--RRINTLIDE 577
V+ +T P E R TL+ E
Sbjct: 125 VQLWNDTVPTESLARAETLVLE 146
>AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen long
variant protein.
Length = 1751
Score = 32.3 bits (70), Expect = 2.2
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +2
Query: 350 PRTGPAAPRSPAGTTRPPSETTRGGM--PR*WVRPDAEGCS*CSGARADLSSTASGVR-- 517
PR G P + G+ PPSE G P PDA + +G A++ + A G+R
Sbjct: 66 PRNGSTEPATAPGSPEPPSELLEDGQDTPTSAESPDAPEEN-IAGVGAEILNVAKGIRSF 124
Query: 518 VRSAENTCPGE--RRINTLIDE 577
V+ +T P E R TL+ E
Sbjct: 125 VQLWNDTVPTESLARAETLVLE 146
>AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collagen
protein.
Length = 1519
Score = 32.3 bits (70), Expect = 2.2
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +2
Query: 350 PRTGPAAPRSPAGTTRPPSETTRGGM--PR*WVRPDAEGCS*CSGARADLSSTASGVR-- 517
PR G P + G+ PPSE G P PDA + +G A++ + A G+R
Sbjct: 66 PRNGSTEPATAPGSPEPPSELLEDGQDTPTSAESPDAPEEN-IAGVGAEILNVAKGIRSF 124
Query: 518 VRSAENTCPGE--RRINTLIDE 577
V+ +T P E R TL+ E
Sbjct: 125 VQLWNDTVPTESLARAETLVLE 146
>AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen
protein.
Length = 1516
Score = 32.3 bits (70), Expect = 2.2
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +2
Query: 350 PRTGPAAPRSPAGTTRPPSETTRGGM--PR*WVRPDAEGCS*CSGARADLSSTASGVR-- 517
PR G P + G+ PPSE G P PDA + +G A++ + A G+R
Sbjct: 66 PRNGSTEPATAPGSPEPPSELLEDGQDTPTSAESPDAPEEN-IAGVGAEILNVAKGIRSF 124
Query: 518 VRSAENTCPGE--RRINTLIDE 577
V+ +T P E R TL+ E
Sbjct: 125 VQLWNDTVPTESLARAETLVLE 146
>AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.
Length = 1324
Score = 32.3 bits (70), Expect = 2.2
Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 264 GARGSPVRPGSPALRGRQGHILGDHGV-GRRG 172
G RGSP RPG P G G GDHG+ G RG
Sbjct: 1112 GPRGSPGRPGPPGSSGPPG-CPGDHGMPGLRG 1142
>Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for
alpha1 chain of basement membrane (type IV) collagen.in
neoplastic tissue). ).
Length = 1212
Score = 31.9 bits (69), Expect = 2.9
Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG-----GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXX 295
P G+ + G P R G G GL+G GP G P
Sbjct: 504 PGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGY 563
Query: 294 XXXTDVASRG--GARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPAS 157
+ +G G G P PG P +G G I+ G GLP S
Sbjct: 564 GPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGS 611
>X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for
alpha-1 chain of collagen IV N-terminus. ).
Length = 944
Score = 31.9 bits (69), Expect = 2.9
Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG-----GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXX 295
P G+ + G P R G G GL+G GP G P
Sbjct: 549 PGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGY 608
Query: 294 XXXTDVASRG--GARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPAS 157
+ +G G G P PG P +G G I+ G GLP S
Sbjct: 609 GPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGS 656
>M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collagen
protein.
Length = 635
Score = 31.9 bits (69), Expect = 2.9
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = -3
Query: 459 PSASGLTHQRG---IPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXX 289
P +G Q+G +P + G +P GL+G AGP+ LP
Sbjct: 373 PGVAGALGQKGDLGLPGQPGLRGPSGIP-GLQGPAGPIGPQGLPGLKGEPGLPGPPGEGR 431
Query: 288 XTDVASRGGARGSPVRPGSPALRGRQG 208
+ + G RG P PGSP + G G
Sbjct: 432 AGEPGT-AGPRGPPGVPGSPGITGPPG 457
>M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen
protein.
Length = 1669
Score = 31.9 bits (69), Expect = 2.9
Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG-----GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXX 295
P G+ + G P R G G GL+G GP G P
Sbjct: 549 PGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGY 608
Query: 294 XXXTDVASRG--GARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPAS 157
+ +G G G P PG P +G G I+ G GLP S
Sbjct: 609 GPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGS 656
>BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein.
Length = 1669
Score = 31.9 bits (69), Expect = 2.9
Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG-----GRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXX 295
P G+ + G P R G G GL+G GP G P
Sbjct: 549 PGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGY 608
Query: 294 XXXTDVASRG--GARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPAS 157
+ +G G G P PG P +G G I+ G GLP S
Sbjct: 609 GPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGS 656
>AL160262-2|CAO03366.1| 227|Homo sapiens collagen type IX alpha 1
protein.
Length = 227
Score = 31.9 bits (69), Expect = 2.9
Identities = 34/109 (31%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = -3
Query: 489 SARAPLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXX 310
S AP Q SG Q+G P V G + +P G RG GPV LP
Sbjct: 53 STGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP-GSRGELGPVGSPGLPGKLGSLGSP 111
Query: 309 XXXXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL 166
+ G RG G P +G QG G+ G G RG L
Sbjct: 112 GLPGLPGPPGLPGMKGDRGV---VGEPGPKGEQG-ASGEEGEAGERGEL 156
>AL080275-1|CAO03651.1| 227|Homo sapiens collagen type IX alpha 1
protein.
Length = 227
Score = 31.9 bits (69), Expect = 2.9
Identities = 34/109 (31%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = -3
Query: 489 SARAPLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXX 310
S AP Q SG Q+G P V G + +P G RG GPV LP
Sbjct: 53 STGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP-GSRGELGPVGSPGLPGKLGSLGSP 111
Query: 309 XXXXXXXXTDVASRGGARGSPVRPGSPALRGRQGHILGDHG-VGRRGGL 166
+ G RG G P +G QG G+ G G RG L
Sbjct: 112 GLPGLPGPPGLPGMKGDRGV---VGEPGPKGEQG-ASGEEGEAGERGEL 156
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 31.5 bits (68), Expect = 3.8
Identities = 35/110 (31%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Frame = -3
Query: 522 RTRTPDAVDDRSARAPLHHE-QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPV--R 352
R +P A DR P P A G G P D G PAG G GPV R
Sbjct: 1026 RDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVG-PAGKSGDRGETGPAGPAGPVGPVGAR 1084
Query: 351 GGALPXXXXXXXXXXXXXXXXXTDVASRG--GARGSPVRPGSPALRGRQG 208
G A P RG G +G P PGSP +G G
Sbjct: 1085 GPAGPQGPRGDKGETGEQGDRGIK-GHRGFSGLQGPPGPPGSPGEQGPSG 1133
Score = 30.7 bits (66), Expect = 6.6
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 359 GPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGARAD 490
GP P P G PP E+ R G P P +G G R +
Sbjct: 995 GPPGPMGPPGLAGPPGESGREGAPAAEGSPGRDGSPGAKGDRGE 1038
Score = 30.3 bits (65), Expect = 8.8
Identities = 28/102 (27%), Positives = 33/102 (32%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P A G+ +G P G P G G AG LP T
Sbjct: 496 PGADGVAGPKG-PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 554
Query: 279 VASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPASA 154
G G P PG P RG+ G ++G G G P A
Sbjct: 555 PPGPAGQDGRPGPPGPPGARGQAG-VMGFPGPKGAAGEPGKA 595
>X98568-1|CAA67178.1| 680|Homo sapiens type X collagen protein.
Length = 680
Score = 31.5 bits (68), Expect = 3.8
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIP--PRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A G G+P P + G + P G +G G LP
Sbjct: 319 PGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPG---SHGLPGPKGETGPAGPAGYPGA 375
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGH-----ILGDHGVGRRGGLP 163
G+ G P PG P L G +G+ GD GVG GLP
Sbjct: 376 KGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLP 421
>X72579-1|CAA51170.1| 680|Homo sapiens collagen X protein.
Length = 680
Score = 31.5 bits (68), Expect = 3.8
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIP--PRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A G G+P P + G + P G +G G LP
Sbjct: 319 PGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPG---SHGLPGPKGETGPAGPAGYPGA 375
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGH-----ILGDHGVGRRGGLP 163
G+ G P PG P L G +G+ GD GVG GLP
Sbjct: 376 KGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLP 421
>X65120-1|CAA46236.1| 629|Homo sapiens alpha1(X)collagen protein.
Length = 629
Score = 31.5 bits (68), Expect = 3.8
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIP--PRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A G G+P P + G + P G +G G LP
Sbjct: 268 PGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPG---SHGLPGPKGETGPAGPAGYPGA 324
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGH-----ILGDHGVGRRGGLP 163
G+ G P PG P L G +G+ GD GVG GLP
Sbjct: 325 KGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLP 370
>X60382-1|CAA42933.1| 680|Homo sapiens collagen subunit (alpha-1
(X)) 3 protein.
Length = 680
Score = 31.5 bits (68), Expect = 3.8
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIP--PRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A G G+P P + G + P G +G G LP
Sbjct: 319 PGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPG---SHGLPGPKGETGPAGPAGYPGA 375
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGH-----ILGDHGVGRRGGLP 163
G+ G P PG P L G +G+ GD GVG GLP
Sbjct: 376 KGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLP 421
>BC130623-1|AAI30624.1| 680|Homo sapiens collagen, type X, alpha
1(Schmid metaphyseal chondrodysplasia) protein.
Length = 680
Score = 31.5 bits (68), Expect = 3.8
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIP--PRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A G G+P P + G + P G +G G LP
Sbjct: 319 PGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPG---SHGLPGPKGETGPAGPAGYPGA 375
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGH-----ILGDHGVGRRGGLP 163
G+ G P PG P L G +G+ GD GVG GLP
Sbjct: 376 KGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLP 421
>BC130621-1|AAI30622.1| 680|Homo sapiens collagen, type X, alpha
1(Schmid metaphyseal chondrodysplasia) protein.
Length = 680
Score = 31.5 bits (68), Expect = 3.8
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIP--PRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A G G+P P + G + P G +G G LP
Sbjct: 319 PGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPG---SHGLPGPKGETGPAGPAGYPGA 375
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGH-----ILGDHGVGRRGGLP 163
G+ G P PG P L G +G+ GD GVG GLP
Sbjct: 376 KGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLP 421
>AL121963-4|CAB87590.1| 680|Homo sapiens collagen type X alpha 1
protein.
Length = 680
Score = 31.5 bits (68), Expect = 3.8
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Frame = -3
Query: 459 PSASGLTHQRGIP--PRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXX 286
P A G G+P P + G + P G +G G LP
Sbjct: 319 PGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPG---SHGLPGPKGETGPAGPAGYPGA 375
Query: 285 TDVASRGGARGSPVRPGSPALRGRQGH-----ILGDHGVGRRGGLP 163
G+ G P PG P L G +G+ GD GVG GLP
Sbjct: 376 KGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLP 421
>U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 chain
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 5.0
Identities = 31/102 (30%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Frame = -3
Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT 283
QP G G PP G GL G GPV GG P
Sbjct: 1117 QPGLPGFPGTPG-PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1175
Query: 282 DVASRGGARGSP--VRPGSPALRGRQGHILGDHGVGRRGGLP 163
A + G G P PG P L G G GD G+ G P
Sbjct: 1176 GPAGQKGEPGQPGFGNPGPPGLPGLSGQ-KGDGGLPGIPGNP 1216
>U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 chain
protein.
Length = 1691
Score = 31.1 bits (67), Expect = 5.0
Identities = 31/102 (30%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Frame = -3
Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT 283
QP G G PP G GL G GPV GG P
Sbjct: 1117 QPGLPGFPGTPG-PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1175
Query: 282 DVASRGGARGSP--VRPGSPALRGRQGHILGDHGVGRRGGLP 163
A + G G P PG P L G G GD G+ G P
Sbjct: 1176 GPAGQKGEPGQPGFGNPGPPGLPGLSGQ-KGDGGLPGIPGNP 1216
>M63473-1|AAA51558.1| 762|Homo sapiens alpha-5 type IV collagen
protein.
Length = 762
Score = 31.1 bits (67), Expect = 5.0
Identities = 31/102 (30%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Frame = -3
Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT 283
QP G G PP G GL G GPV GG P
Sbjct: 194 QPGLPGFPGTPG-PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 252
Query: 282 DVASRGGARGSP--VRPGSPALRGRQGHILGDHGVGRRGGLP 163
A + G G P PG P L G G GD G+ G P
Sbjct: 253 GPAGQKGEPGQPGFGNPGPPGLPGLSGQ-KGDGGLPGIPGNP 293
>M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen
protein.
Length = 1604
Score = 31.1 bits (67), Expect = 5.0
Identities = 31/102 (30%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Frame = -3
Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT 283
QP G G PP G GL G GPV GG P
Sbjct: 1036 QPGLPGFPGTPG-PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1094
Query: 282 DVASRGGARGSP--VRPGSPALRGRQGHILGDHGVGRRGGLP 163
A + G G P PG P L G G GD G+ G P
Sbjct: 1095 GPAGQKGEPGQPGFGNPGPPGLPGLSGQ-KGDGGLPGIPGNP 1135
>M31115-1|AAA52045.1| 772|Homo sapiens COL4A5 protein.
Length = 772
Score = 31.1 bits (67), Expect = 5.0
Identities = 31/102 (30%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Frame = -3
Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT 283
QP G G PP G GL G GPV GG P
Sbjct: 204 QPGLPGFPGTPG-PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 262
Query: 282 DVASRGGARGSP--VRPGSPALRGRQGHILGDHGVGRRGGLP 163
A + G G P PG P L G G GD G+ G P
Sbjct: 263 GPAGQKGEPGQPGFGNPGPPGLPGLSGQ-KGDGGLPGIPGNP 303
>AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 5.0
Identities = 31/102 (30%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Frame = -3
Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT 283
QP G G PP G GL G GPV GG P
Sbjct: 1117 QPGLPGFPGTPG-PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1175
Query: 282 DVASRGGARGSP--VRPGSPALRGRQGHILGDHGVGRRGGLP 163
A + G G P PG P L G G GD G+ G P
Sbjct: 1176 GPAGQKGEPGQPGFGNPGPPGLPGLSGQ-KGDGGLPGIPGNP 1216
>AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 5.0
Identities = 31/102 (30%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Frame = -3
Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT 283
QP G G PP G GL G GPV GG P
Sbjct: 1117 QPGLPGFPGTPG-PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1175
Query: 282 DVASRGGARGSP--VRPGSPALRGRQGHILGDHGVGRRGGLP 163
A + G G P PG P L G G GD G+ G P
Sbjct: 1176 GPAGQKGEPGQPGFGNPGPPGLPGLSGQ-KGDGGLPGIPGNP 1216
>AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 5.0
Identities = 31/102 (30%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Frame = -3
Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT 283
QP G G PP G GL G GPV GG P
Sbjct: 1117 QPGLPGFPGTPG-PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1175
Query: 282 DVASRGGARGSP--VRPGSPALRGRQGHILGDHGVGRRGGLP 163
A + G G P PG P L G G GD G+ G P
Sbjct: 1176 GPAGQKGEPGQPGFGNPGPPGLPGLSGQ-KGDGGLPGIPGNP 1216
>X55525-1|CAA39142.1| 397|Homo sapiens type I collagen protein.
Length = 397
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMP 430
P GPA PR PAG + P + R G P
Sbjct: 85 PGSVGPAGPRGPAGPSGPAGKDGRTGHP 112
>V00503-1|CAA23761.1| 740|Homo sapiens protein ( Human mRNA
encoding Pro-alpha-2 chain of type I procollagen. (major
part). ).
Length = 740
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMP 430
P GPA PR PAG + P + R G P
Sbjct: 422 PGSVGPAGPRGPAGPSGPAGKDGRTGHP 449
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 30.7 bits (66), Expect = 6.6
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 359 GPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGARAD 490
GP P P G PP E+ R G P P +G G R +
Sbjct: 571 GPPGPMGPPGLAGPPGESGREGAPAAEGSPGRDGSPGAKGDRGE 614
Score = 30.3 bits (65), Expect = 8.8
Identities = 28/102 (27%), Positives = 33/102 (32%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P A G+ +G P G P G G AG LP T
Sbjct: 72 PGADGVAGPKG-PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 130
Query: 279 VASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPASA 154
G G P PG P RG+ G ++G G G P A
Sbjct: 131 PPGPAGQDGRPGPPGPPGARGQAG-VMGFPGPKGAAGEPGKA 171
>BC042428-1|AAH42428.1| 309|Homo sapiens COL23A1 protein protein.
Length = 309
Score = 30.7 bits (66), Expect = 6.6
Identities = 27/100 (27%), Positives = 33/100 (33%)
Frame = -3
Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXT 283
Q A+G G PP G G RGA GP P
Sbjct: 143 QDGAAGPPGPPG-PPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKGEP 201
Query: 282 DVASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLP 163
V + G G+P +PG P +G G +G G G P
Sbjct: 202 GVPGKKGDDGTPSQPGPPGPKGEPGS-MGPRGENGVDGAP 240
>BC036012-1|AAH36012.1| 964|Homo sapiens tripartite motif-containing
37 protein.
Length = 964
Score = 30.7 bits (66), Expect = 6.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 263 ARGGHLYVLGLQPFEGGKDIS-LEITVWDGVVVSPLAPAYNDSPEPMDTDDKEEESQDSV 87
A+GGHL L + E + L+ + +G +P +DS DT+++E+E SV
Sbjct: 862 AKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGMSSDSDIECDTENEEQEEHTSV 921
>AF213365-1|AAL36460.1| 964|Homo sapiens POB1 protein.
Length = 964
Score = 30.7 bits (66), Expect = 6.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 263 ARGGHLYVLGLQPFEGGKDIS-LEITVWDGVVVSPLAPAYNDSPEPMDTDDKEEESQDSV 87
A+GGHL L + E + L+ + +G +P +DS DT+++E+E SV
Sbjct: 862 AKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGMSSDSDIECDTENEEQEEHTSV 921
>AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen
protein.
Length = 1186
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 347 PPRTGPAAPRSPAGTTRPPSETTRGGMP 430
P GPA PR PAG + P + R G P
Sbjct: 864 PGSVGPAGPRGPAGPSGPAGKDGRTGHP 891
>AB020705-1|BAA74921.1| 979|Homo sapiens KIAA0898 protein protein.
Length = 979
Score = 30.7 bits (66), Expect = 6.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 263 ARGGHLYVLGLQPFEGGKDIS-LEITVWDGVVVSPLAPAYNDSPEPMDTDDKEEESQDSV 87
A+GGHL L + E + L+ + +G +P +DS DT+++E+E SV
Sbjct: 877 AKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGMSSDSDIECDTENEEQEEHTSV 936
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 30.3 bits (65), Expect = 8.8
Identities = 28/102 (27%), Positives = 33/102 (32%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P A G+ +G P G P G G AG LP T
Sbjct: 496 PGADGVAGPKG-PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 554
Query: 279 VASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPASA 154
G G P PG P RG+ G ++G G G P A
Sbjct: 555 PPGPAGQDGRPGPPGPPGARGQAG-VMGFPGPKGAAGEPGKA 595
Score = 30.3 bits (65), Expect = 8.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 359 GPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGARAD 490
GP P P G PP E+ R G P P +G G R +
Sbjct: 995 GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1038
>M11162-1|AAA75386.1| 138|Homo sapiens alpha-1 type I collagen
protein.
Length = 138
Score = 30.3 bits (65), Expect = 8.8
Identities = 28/102 (27%), Positives = 33/102 (32%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTD 280
P A G+ +G P G P G G AG LP T
Sbjct: 9 PGADGVAGPKG-PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 67
Query: 279 VASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGGLPASA 154
G G P PG P RG+ G ++G G G P A
Sbjct: 68 PPGPAGQDGRPGPPGPPGARGQAG-VMGFPGPKGAAGEPGKA 108
>AL356755-3|CAI23466.1| 299|Homo sapiens GDNF family receptor alpha
4 protein.
Length = 299
Score = 30.3 bits (65), Expect = 8.8
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG-GRVVPAGLRGAAGPVRGGAL 340
P SGL H PR + G GR +PA LRG G G A+
Sbjct: 161 PGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAV 201
>AJ291674-1|CAC19691.1| 299|Homo sapiens putative GDNF family
receptor alpha 4, GPI anchored isoform b protein.
Length = 299
Score = 30.3 bits (65), Expect = 8.8
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 459 PSASGLTHQRGIPPRVVSDG-GRVVPAGLRGAAGPVRGGAL 340
P SGL H PR + G GR +PA LRG G G A+
Sbjct: 161 PGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAV 201
>AF258676-1|AAG16733.1| 845|Homo sapiens MUCDHL-FL protein.
Length = 845
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 359 GPAAPRSPAGTT-RPPSETTRGGMP 430
G P P+GTT RPP+ +T GG P
Sbjct: 498 GGTGPHPPSGTTLRPPTSSTPGGSP 522
>AF258674-2|AAG16731.1| 845|Homo sapiens MUCDHL-FL protein.
Length = 845
Score = 30.3 bits (65), Expect = 8.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 359 GPAAPRSPAGTT-RPPSETTRGGMP 430
G P P+GTT RPP+ +T GG P
Sbjct: 498 GGTGPHPPSGTTLRPPTSSTPGGSP 522
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,484,582
Number of Sequences: 237096
Number of extensions: 1873616
Number of successful extensions: 12669
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 7174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12007
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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