Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I09
(789 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation fa... 69 1e-11
AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein. 69 1e-11
AK222574-1|BAD96294.1| 616|Homo sapiens cleavage stimulation fa... 69 1e-11
AB014589-1|BAA31664.1| 547|Homo sapiens KIAA0689 protein protein. 69 1e-11
Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation fact... 67 6e-11
Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation fact... 67 6e-11
M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation fact... 67 6e-11
BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation fa... 67 6e-11
BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage sti... 67 6e-11
BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation fa... 67 6e-11
Z95327-4|CAI42681.1| 225|Homo sapiens cleavage stimulation fact... 46 2e-04
BC130610-1|AAI30611.1| 1672|Homo sapiens KIDINS220 protein protein. 31 4.7
AL133620-1|CAB63746.1| 1031|Homo sapiens hypothetical protein pr... 31 4.7
AB033076-1|BAA86564.2| 1777|Homo sapiens KIAA1250 protein protein. 31 4.7
>BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
protein.
Length = 616
Score = 69.3 bits (162), Expect = 1e-11
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = -1
Query: 228 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 106
DQEKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 573 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 613
Score = 47.2 bits (107), Expect = 7e-05
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXHPSXPCTSNLLPG 659
LQNPQLAY L QAQV+MRI+DP A + H T L+PG
Sbjct: 163 LQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTP-LIPG 203
>AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein.
Length = 616
Score = 69.3 bits (162), Expect = 1e-11
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = -1
Query: 228 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 106
DQEKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 573 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 613
Score = 47.2 bits (107), Expect = 7e-05
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXHPSXPCTSNLLPG 659
LQNPQLAY L QAQV+MRI+DP A + H T L+PG
Sbjct: 163 LQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTP-LIPG 203
>AK222574-1|BAD96294.1| 616|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
variant protein.
Length = 616
Score = 69.3 bits (162), Expect = 1e-11
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = -1
Query: 228 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 106
DQEKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 573 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 613
Score = 47.2 bits (107), Expect = 7e-05
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXHPSXPCTSNLLPG 659
LQNPQLAY L QAQV+MRI+DP A + H T L+PG
Sbjct: 163 LQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTP-LIPG 203
>AB014589-1|BAA31664.1| 547|Homo sapiens KIAA0689 protein protein.
Length = 547
Score = 69.3 bits (162), Expect = 1e-11
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = -1
Query: 228 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 106
DQEKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 504 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 544
Score = 47.2 bits (107), Expect = 7e-05
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXHPSXPCTSNLLPG 659
LQNPQLAY L QAQV+MRI+DP A + H T L+PG
Sbjct: 94 LQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTP-LIPG 134
>Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 67.3 bits (157), Expect = 6e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -1
Query: 228 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 106
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXH 695
LQNPQLAY L QAQV+MRIVDP A + H
Sbjct: 163 LQNPQLAYALLQAQVVMRIVDPEIALKILH 192
>Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 67.3 bits (157), Expect = 6e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -1
Query: 228 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 106
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXH 695
LQNPQLAY L QAQV+MRIVDP A + H
Sbjct: 163 LQNPQLAYALLQAQVVMRIVDPEIALKILH 192
>M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation factor
protein.
Length = 577
Score = 67.3 bits (157), Expect = 6e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -1
Query: 228 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 106
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXH 695
LQNPQLAY L QAQV+MRIVDP A + H
Sbjct: 163 LQNPQLAYALLQAQVVMRIVDPEIALKILH 192
>BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 67.3 bits (157), Expect = 6e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -1
Query: 228 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 106
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXH 695
LQNPQLAY L QAQV+MRIVDP A + H
Sbjct: 163 LQNPQLAYALLQAQVVMRIVDPEIALKILH 192
>BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage
stimulation factor, 3' pre-RNA, subunit 2, 64kD protein.
Length = 559
Score = 67.3 bits (157), Expect = 6e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -1
Query: 228 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 106
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 516 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 556
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXH 695
LQNPQLAY L QAQV+MRIVDP A + H
Sbjct: 162 LQNPQLAYALLQAQVVMRIVDPEIALKILH 191
>BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 67.3 bits (157), Expect = 6e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -1
Query: 228 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 106
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXH 695
LQNPQLAY L QAQV+MRIVDP A + H
Sbjct: 163 LQNPQLAYALLQAQVVMRIVDPEIALKILH 192
>Z95327-4|CAI42681.1| 225|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 225
Score = 46.0 bits (104), Expect = 2e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXH 695
LQNPQLAY L QAQV+MRIVDP A + H
Sbjct: 154 LQNPQLAYALLQAQVVMRIVDPEIALKILH 183
>BC130610-1|AAI30611.1| 1672|Homo sapiens KIDINS220 protein protein.
Length = 1672
Score = 31.1 bits (67), Expect = 4.7
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 45 LQITRITEK--TIRSILISNAAVCSSRFVLSAGVYWRVVRAVTKRSVRRITAALALSTRP 218
L I R+ K T+ ++LIS A+V FVL+ +W+V+ ++ +R+ A S
Sbjct: 635 LAIFRVDPKHLTVNAVLISIASVVGLAFVLNCRTWWQVLDSLLNSQRKRLHN--AASKLH 692
Query: 219 SLDQKHPMEYLEC 257
L + M+ L+C
Sbjct: 693 KLKSEGFMKVLKC 705
>AL133620-1|CAB63746.1| 1031|Homo sapiens hypothetical protein
protein.
Length = 1031
Score = 31.1 bits (67), Expect = 4.7
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 45 LQITRITEK--TIRSILISNAAVCSSRFVLSAGVYWRVVRAVTKRSVRRITAALALSTRP 218
L I R+ K T+ ++LIS A+V FVL+ +W+V+ ++ +R+ A S
Sbjct: 678 LAIFRVDPKHLTVNAVLISIASVVGLAFVLNCRTWWQVLDSLLNSQRKRLHN--AASKLH 735
Query: 219 SLDQKHPMEYLEC 257
L + M+ L+C
Sbjct: 736 KLKSEGFMKVLKC 748
>AB033076-1|BAA86564.2| 1777|Homo sapiens KIAA1250 protein protein.
Length = 1777
Score = 31.1 bits (67), Expect = 4.7
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 45 LQITRITEK--TIRSILISNAAVCSSRFVLSAGVYWRVVRAVTKRSVRRITAALALSTRP 218
L I R+ K T+ ++LIS A+V FVL+ +W+V+ ++ +R+ A S
Sbjct: 683 LAIFRVDPKHLTVNAVLISIASVVGLAFVLNCRTWWQVLDSLLNSQRKRLHN--AASKLH 740
Query: 219 SLDQKHPMEYLEC 257
L + M+ L+C
Sbjct: 741 KLKSEGFMKVLKC 753
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,722,511
Number of Sequences: 237096
Number of extensions: 2254937
Number of successful extensions: 5708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5695
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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