Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I09
         (789 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family...    41   0.001
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s...    33   0.22 
At5g44050.1 68418.m05390 MATE efflux family protein similar to r...    29   4.6  
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil...    28   6.1  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    28   8.1  

>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
           protein similar to proline-rich protein precursor
           GB:AAC34889 [Glycine max]
          Length = 388

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/40 (47%), Positives = 28/40 (70%)
 Frame = -1

Query: 243 PSGASDQEKAALIMQVLQLSDEQIALLPPEQRASILLLKE 124
           P+  S + + AL+ QV+ L+ EQI LLPPEQR  +L L++
Sbjct: 345 PAPISAEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQ 384


>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
           similar to cleavage stimulation factor 64 kilodalton
           subunit GB:AAD47839 GI:5713194 from [Drosophila
           melanogaster], SP|P33240 Cleavage stimulation factor, 64
           kDa subunit {Homo sapiens}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 461

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -1

Query: 231 SDQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQI 118
           S   ++ L+ QV+ L+ EQ+ LL PEQ+  +L L++ +
Sbjct: 415 SPDVQSTLLQQVMNLTPEQLRLLTPEQQQEVLKLQQAL 452


>At5g44050.1 68418.m05390 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 491

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 550 TGIVVLVGWRSGIIVYRWLCWWWIGWYISIRLGW 651
           +G+ V  GW+S +      C+++IG  + I +GW
Sbjct: 403 SGVAVGSGWQSLVAFINLGCYYFIGLPLGIVMGW 436


>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 499

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 152 NAPVYSC*KNKSRRAHSSVRNKNRANRFLCNSCN 51
           N P Y    + S    +S +NK R  RFL N C+
Sbjct: 347 NTPKYGLIFHSSFIGRASAKNKGRIARFLANKCS 380


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
            MRP-like ABC transporter [Arabidopsis thaliana]
            GI:2316016; contains Pfam profile: PF00005 ABC
            transporter
          Length = 1466

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 526  AKINIHGRTGIVVLVGWRSGIIVYRWL--CWWWIGWYIS 636
            A INI G  G++V V W+  I+    +  C W+  +YIS
Sbjct: 1022 AAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYIS 1060


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,673,723
Number of Sequences: 28952
Number of extensions: 288571
Number of successful extensions: 912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)