Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I08
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   4.0  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    26   5.3  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   7.0  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 390 TSTCSDDHDHSVKSDTDKEEENGNSEILTS 479
           TST +D   H+V +D+  +  NG S  L S
Sbjct: 230 TSTSADISQHTVSNDSSNKLSNGRSSSLDS 259


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 518 FN*FIYG*YLLISRCKNFRISIFFFFVGI 432
           F+ F YG Y+ ++ C NF ++++  F  +
Sbjct: 463 FSRFYYGHYVFVNTCHNFFLTLYQSFTEV 491


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 573 PGPMVQWVPGPY*YTRAPL 629
           P P   W+ G Y Y+R PL
Sbjct: 521 PKPWTSWIDGGYYYSRQPL 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,418
Number of Sequences: 5004
Number of extensions: 58314
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)