Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I08
(784 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11) 33 0.26
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 30 1.8
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 29 3.2
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 29 3.2
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 29 4.2
SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 5.6
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 29 5.6
SB_54530| Best HMM Match : Collagen (HMM E-Value=1.9e-18) 29 5.6
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 28 7.4
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_45508| Best HMM Match : PT (HMM E-Value=7) 28 7.4
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 28 7.4
SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036) 28 9.8
SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5) 28 9.8
SB_39314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_37949| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_13675| Best HMM Match : SAP (HMM E-Value=0.0036) 28 9.8
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07) 28 9.8
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09) 28 9.8
SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19) 28 9.8
SB_12214| Best HMM Match : SAP (HMM E-Value=0.0036) 28 9.8
>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
Length = 376
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 710 SKSXWQXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVN-TRGSWGPTGQ 534
S++ G RG GSR P G+QG PG G + PR N T G GP G
Sbjct: 199 SQASGSTGPRGYNGSRGPPGPSGPQGQQGPPGT---KGPQGFMGPRGHNGTAGQQGPQGP 255
Query: 533 IGPQ 522
GP+
Sbjct: 256 PGPK 259
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/59 (35%), Positives = 22/59 (37%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQYFN 513
G G G + P T G G G PG P Y N G GP GQ GP N
Sbjct: 298 GLPGAPGPKGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHG-NPAGPQGPNGQPGPPGIN 355
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/59 (35%), Positives = 22/59 (37%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQYFN 513
G G G + P T G G G PG P Y N G GP GQ GP N
Sbjct: 383 GLPGAPGPKGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHG-NPAGPQGPNGQPGPPGIN 440
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQYFN 513
G +G PG+ PG P + P N G+ GP G GP N
Sbjct: 61 GPKGPPGLPGPPGPPGFQGPPG-NPAGAIGPPGLPGPNGVN 100
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G PGV+ PG+P P G G TG GP
Sbjct: 582 GNPGDPGVMGFPGEPQRGEPGDPGRPGLPGQTGADGP 618
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRWYSGSPGPTNTPGLP 627
G P P DP V+ G G PG PGLP
Sbjct: 577 GDAIPGNPGDPGVMGFPGEPQRGEPGDPGRPGLP 610
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
G RG+ G+ P G G PG G+P RP G++G G+ G
Sbjct: 474 GLRGMTGNPGPNGPAGATGPPGIPGFPGQKGEPGISRPGPPGENGAFGLPGRKG 527
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTR-GSWGPTGQIGPQYF 516
G G G R P G QG+PG G P P VN G GP G GPQ +
Sbjct: 541 GLNGTVGPRGPQGFSGPRGLQGTPGQNGLQGPPGPQGPMGVNNSIGPPGPPGPQGPQVY 599
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +3
Query: 528 PYLPCRPPGPTSIDRPGPMVQWVPGPY*YTRAPLTAEA-XPCXSRTPGPLXTSFSVLPXR 704
P+ P P P VQW P P Y A + A+A P P P ++ + P
Sbjct: 669 PHFSMAPRVAAQPPHPPPGVQWQPAPMSYP-ADMRAQAYQPMVHYDPMPQTSNPAARPAF 727
Query: 705 FAVXPSXVV 731
+AV P V
Sbjct: 728 YAVPPGGPV 736
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = -3
Query: 671 GSRCPTXTWSGFGRQGSPGVLVGPGDPLYH-RPRTVNTRGSWGPTGQIGPQ 522
G R P G QG G PG Y+ +P RG GP G GPQ
Sbjct: 10 GQRGPDGPPGDIGDQGPSGEAGKPGPLGYNGQPGNQGMRGDPGPQGDQGPQ 60
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +1
Query: 538 PVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTP 681
P GPQ P G PGP PG P P D V ++D TP
Sbjct: 3809 PPGPQGP---PGQASQIPGPPGPQGPPGPPGPPGRDVVDAQNIDGMTP 3853
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 526 GPICPVGPQ-DPRVLTVLGRWYSGSPGPTNTPGLP 627
GP P+GPQ DP G+ SG PGP PG P
Sbjct: 956 GPRGPIGPQGDPGPEGERGQ--SGPPGPPGPPGPP 988
>SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -3
Query: 686 KRGV*GSRCPTXTWSGFGRQGSPGVLVGPG-DPLYHRPRTVNTRGSWGPTGQIG 528
KRG GSR T G++G G PG D RP G GP G+IG
Sbjct: 112 KRGKRGSRGRTGAKGSRGKEGKRGKTGLPGTDGRDGRPGVPGPIGPIGPPGKIG 165
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 525 GPYLPCRPPGPTSIDRPGPMVQWVPGP 605
GP P P D GP QWVPGP
Sbjct: 242 GPPFHGEPRPPPHHDMRGPPDQWVPGP 268
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTV----NTRGSWGPTGQIGP 525
G G G P + GRQG PG G P +GS GPTG++GP
Sbjct: 359 GVPGAQGMPGPRGSTGEAGRQGPPGANGDRGQPGAPGAEGAMGEKGNQGSRGPTGRVGP 417
>SB_54530| Best HMM Match : Collagen (HMM E-Value=1.9e-18)
Length = 427
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 641 GFGRQGSPGVLVGPGDP-LYHRPRTVNTRGSWGPTGQ 534
G QGS G PGDP LY P +G GP G+
Sbjct: 203 GMRFQGSKGTPGAPGDPGLYGPPGPPGKKGPKGPKGR 239
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDP-LYHRPRTVNTRGSWGPTGQIG 528
G G+ GS P G +G PG++ PG + R + RG GP G+ G
Sbjct: 179 GLMGIQGSEGPYGPQGMTGDRGKPGLVGDPGKKGMAGRAGAMGMRGLPGPPGRRG 233
>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 360 EK*WRVVKLATSTCSDDHDHSVKSDTDKEEEN 455
EK R+V LA+S SD+ D ++S + +E EN
Sbjct: 73 EKKLRIVDLASSLPSDELDRGIRSRSMREMEN 104
>SB_45508| Best HMM Match : PT (HMM E-Value=7)
Length = 261
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 604 PTNTPGLP*RPKPDHVXVGHLDPXTPRFPXCQXDLL 711
P NTP P PKP + H +P P P Q LL
Sbjct: 207 PVNTPNNPRSPKPSPLPQDHRNPPPP--PKIQDPLL 240
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPR-TVNTRGSWGPTG 537
G +G G PT G G PG PGD Y P+ + RG GP G
Sbjct: 230 GPQGKQGGVGPTGGHGPPGPMGEPGRKGSPGDIGYVGPKGKLGDRGPQGPVG 281
>SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 402 SDDHDHSVKSDTDKEEENGNSEILTS 479
S D D S SD D +EE G++E+LTS
Sbjct: 165 SSDSD-SDSSDCDGDEEGGSAEVLTS 189
>SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -3
Query: 659 PTXTWSGFGRQGSPGVLVGPGDPLYH-RPRTVNTRGSWGPTGQI 531
P W G Q P V L H RP VNT S P G +
Sbjct: 351 PGINWPRHGPQAFPNFPVSSHSGLLHQRPLVVNTMSSHDPAGGV 394
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
G G+ G R P G G PG PGD Y P +G+ GP G G
Sbjct: 605 GTPGMDGKRGPRGPIGEKGPTGFPGP---PGDSDYGPPGDKGLKGNTGPPGDEG 655
>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 1136
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 402 SDDHDHSVKSDTDKEEENGNSEILTS 479
S D D S SD D +EE G++E+LTS
Sbjct: 1094 SSDSD-SDSSDCDGDEEGGSAEVLTS 1118
>SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5)
Length = 632
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 402 SDDHDHSVKSDTDKEEENGNSEILTS 479
S D D S SD D +EE G++E+LTS
Sbjct: 590 SSDSD-SDSSDCDGDEEGGSAEVLTS 614
>SB_39314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 402 SDDHDHSVKSDTDKEEENGNSEILTS 479
S D D S SD D +EE G++E+LTS
Sbjct: 123 SSDSD-SDSSDCDGDEEGGSAEVLTS 147
>SB_37949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 375 VVKLATSTCSDDHDHSVKSDTDKEEENGN 461
+ K +T+ C + + SDTD+++ENG+
Sbjct: 20 LTKASTTMCDNPSLADIDSDTDEQDENGH 48
>SB_13675| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 240
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 405 DDHDHSVKSDTDKEEENGNSEILTS 479
D S SD D +EE G++E+LTS
Sbjct: 198 DSSSDSDSSDCDGDEEGGSAEVLTS 222
>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
Length = 621
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFPXC-QX 702
GP P GP P+V + SG GP G P + G LD P P C Q
Sbjct: 71 GPSGPQGPSGPQVPNG-PQGPSGPQGPNGPQGPPRLDLGPSLDFGWLDLLPPLIPECYQG 129
Query: 703 DLLXXPVQXYXLXVXL 750
+ L Y + + L
Sbjct: 130 EGLNTDPAYYEIAIML 145
>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
Length = 1487
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 402 SDDHDHSVKSDTDKEEENGNSEILTS 479
S D D S SD D +EE G++E+LTS
Sbjct: 1445 SSDSD-SDSSDCDGDEEGGSAEVLTS 1469
>SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)
Length = 922
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 224 VKQQK*LNKFSKNIEESSFYSRYCVLFKNRCDVYLRLVCMNVVLV 90
VK + +N F+ N++ SSF SR C +N+ + L + VVL+
Sbjct: 592 VKTNRLVNVFNVNLDHSSFGSRICQGIQNQFVLLFLLNGIAVVLL 636
>SB_12214| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 352
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 402 SDDHDHSVKSDTDKEEENGNSEILTS 479
S D D S SD D +EE G++E+LTS
Sbjct: 310 SSDSD-SDSSDCDGDEEGGSAEVLTS 334
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,750,069
Number of Sequences: 59808
Number of extensions: 475947
Number of successful extensions: 1355
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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