Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I08
(784 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3... 40 0.013
AC112721-1|AAY24135.1| 2588|Homo sapiens unknown protein. 40 0.013
AB209636-1|BAD92873.1| 1702|Homo sapiens alpha 3 type VI collage... 40 0.013
Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ... 35 0.29
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ... 35 0.29
BC033174-1|AAH33174.1| 979|Homo sapiens Similar to collagen, ty... 35 0.29
AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein. 35 0.29
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein. 33 0.88
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen... 33 0.88
AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collag... 33 0.88
X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 ... 33 1.5
M81379-1|AAA51556.1| 340|Homo sapiens alpha-3 type IV collagen ... 33 1.5
AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha... 33 1.5
AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alp... 33 1.5
AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alp... 33 1.5
AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen... 33 1.5
AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein. 33 1.5
AB058773-1|BAB47499.1| 832|Homo sapiens KIAA1870 protein protein. 33 1.5
L22548-1|AAA51864.1| 684|Homo sapiens collagen type XVIII alpha... 32 2.0
BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, a... 32 2.0
BC052575-1|AAH52575.1| 1028|Homo sapiens collagen, type VI, alph... 32 2.0
BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, ty... 32 2.0
AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen mid... 32 2.0
AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen lon... 32 2.0
AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen sho... 32 2.0
AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collag... 32 2.0
AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen pro... 32 2.0
AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen pro... 32 2.0
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ... 32 2.7
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat... 32 2.7
AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein. 32 2.7
X98568-1|CAA67178.1| 680|Homo sapiens type X collagen protein. 31 4.7
X72579-1|CAA51170.1| 680|Homo sapiens collagen X protein. 31 4.7
X65120-1|CAA46236.1| 629|Homo sapiens alpha1(X)collagen protein. 31 4.7
X60382-1|CAA42933.1| 680|Homo sapiens collagen subunit (alpha-... 31 4.7
L13738-1|AAA53570.2| 1036|Homo sapiens activated p21cdc42Hs kina... 31 4.7
BC130623-1|AAI30624.1| 680|Homo sapiens collagen, type X, alpha... 31 4.7
BC130621-1|AAI30622.1| 680|Homo sapiens collagen, type X, alpha... 31 4.7
BC117170-1|AAI17171.1| 1714|Homo sapiens collagen, type XXIV, al... 31 4.7
BC116180-1|AAI16181.1| 846|Homo sapiens COL24A1 protein protein. 31 4.7
BC113654-1|AAI13655.1| 1714|Homo sapiens collagen, type XXIV, al... 31 4.7
AY244357-1|AAP80185.1| 1714|Homo sapiens alpha 1 type XXIV colla... 31 4.7
AL445427-1|CAI19120.1| 1714|Homo sapiens collagen, type XXIV, al... 31 4.7
AL359971-1|CAI16233.1| 1714|Homo sapiens collagen, type XXIV, al... 31 4.7
AL356059-1|CAH71121.1| 1714|Homo sapiens collagen, type XXIV, al... 31 4.7
AL121963-4|CAB87590.1| 680|Homo sapiens collagen type X alpha 1... 31 4.7
AK131539-1|BAD18675.1| 1086|Homo sapiens protein ( Homo sapiens ... 31 4.7
S57132-1|AAB25797.1| 1186|Homo sapiens type XVI collagen alpha 1... 31 6.2
M95610-1|AAA80977.1| 675|Homo sapiens alpha-2 IX collagen protein. 31 6.2
M92642-1|AAA58427.1| 1603|Homo sapiens alpha-1 type XVI collagen... 31 6.2
AL050341-6|CAB81611.1| 689|Homo sapiens collagen type IX alpha ... 31 6.2
AF019406-1|AAC33512.1| 689|Homo sapiens collagen type IX alpha ... 31 6.2
AB209571-1|BAD92808.1| 1463|Homo sapiens alpha 1 type XVI collag... 31 6.2
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 30 8.2
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 30 8.2
U73778-1|AAC51244.1| 3063|Homo sapiens collagen type XII alpha-1... 30 8.2
M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen p... 30 8.2
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 30 8.2
J04177-1|AAA51891.1| 1806|Homo sapiens COL11A1 protein. 30 8.2
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 30 8.2
AL354664-1|CAH71310.1| 3063|Homo sapiens collagen type XII alpha... 30 8.2
AL096771-3|CAI19908.1| 3063|Homo sapiens collagen type XII alpha... 30 8.2
AL080250-2|CAI19898.1| 3063|Homo sapiens collagen type XII alpha... 30 8.2
AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3... 30 8.2
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 30 8.2
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 30 8.2
AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha... 30 8.2
>X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3
chain protein.
Length = 3176
Score = 39.5 bits (88), Expect = 0.013
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGV---LVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G+ GV G T GFGR+G PG GPG P + + TRG+ GP G GP
Sbjct: 2183 GRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQ--GTRGAQGPAGPAGP 2238
>AC112721-1|AAY24135.1| 2588|Homo sapiens unknown protein.
Length = 2588
Score = 39.5 bits (88), Expect = 0.013
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGV---LVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G+ GV G T GFGR+G PG GPG P + + TRG+ GP G GP
Sbjct: 2183 GRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQ--GTRGAQGPAGPAGP 2238
>AB209636-1|BAD92873.1| 1702|Homo sapiens alpha 3 type VI collagen
isoform 5 precursor variant protein.
Length = 1702
Score = 39.5 bits (88), Expect = 0.013
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGV---LVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G+ GV G T GFGR+G PG GPG P + + TRG+ GP G GP
Sbjct: 708 GRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQ--GTRGAQGPAGPAGP 763
>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
protein.
Length = 1690
Score = 35.1 bits (77), Expect = 0.29
Identities = 21/55 (38%), Positives = 24/55 (43%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+ G P G G PGVLV P PL P G +G TG +GP
Sbjct: 332 GDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVGP 386
>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4
chain protein.
Length = 1690
Score = 35.1 bits (77), Expect = 0.29
Identities = 21/55 (38%), Positives = 24/55 (43%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+ G P G G PGVLV P PL P G +G TG +GP
Sbjct: 332 GDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVGP 386
>BC033174-1|AAH33174.1| 979|Homo sapiens Similar to collagen, type
VI, alpha 3 protein.
Length = 979
Score = 35.1 bits (77), Expect = 0.29
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -3
Query: 641 GFGRQGSPGV---LVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
GFGR+G PG GPG P + + TRG+ GP G GP
Sbjct: 1 GFGRRGPPGAKGNKGGPGQPGFEGEQ--GTRGAQGPAGPAGP 40
>AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.
Length = 1324
Score = 35.1 bits (77), Expect = 0.29
Identities = 21/55 (38%), Positives = 24/55 (43%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+ G P G G PGVLV P PL P G +G TG +GP
Sbjct: 332 GDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVGP 386
>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
Length = 2912
Score = 33.5 bits (73), Expect = 0.88
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G G G++ P GRQG G PGDP P +G G G GP+
Sbjct: 1510 GVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPR 1565
Score = 30.3 bits (65), Expect = 8.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G G G P G +G PG PG L V G GP+G +GPQ
Sbjct: 2154 GPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQ 2209
>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
protein.
Length = 2944
Score = 33.5 bits (73), Expect = 0.88
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G G G++ P GRQG G PGDP P +G G G GP+
Sbjct: 1510 GVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPR 1565
Score = 30.3 bits (65), Expect = 8.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G G G P G +G PG PG L V G GP+G +GPQ
Sbjct: 2186 GPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQ 2241
>AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collagen
precursor variant protein.
Length = 1027
Score = 33.5 bits (73), Expect = 0.88
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G G G++ P GRQG G PGDP P +G G G GP+
Sbjct: 149 GVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPR 204
Score = 30.3 bits (65), Expect = 8.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G G G P G +G PG PG L V G GP+G +GPQ
Sbjct: 825 GPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQ 880
>X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 chain
protein.
Length = 1670
Score = 32.7 bits (71), Expect = 1.5
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +1
Query: 526 GPICPVGPQ----DPRVLTVLGRWYSGSPGPTNTPGLP---*RPKPDHVXVGHLDPXTPR 684
GPI P GP DP L ++ GSPGP TPG P P P G+L P PR
Sbjct: 1334 GPIGPKGPPGVRGDPGTLKIIS--LPGSPGPPGTPGEPGMQGEPGPPG-PPGNLGPCGPR 1390
>M81379-1|AAA51556.1| 340|Homo sapiens alpha-3 type IV collagen
protein.
Length = 340
Score = 32.7 bits (71), Expect = 1.5
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +1
Query: 526 GPICPVGPQ----DPRVLTVLGRWYSGSPGPTNTPGLP---*RPKPDHVXVGHLDPXTPR 684
GPI P GP DP L ++ GSPGP TPG P P P G+L P PR
Sbjct: 4 GPIGPKGPPGVRGDPGTLKIIS--LPGSPGPPGTPGEPGMQGEPGPPG-PPGNLGPCGPR 60
>AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha 1
chain precursor protein.
Length = 1860
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDP-LYHRPRTVNTRGSWGPTGQIG 528
GK G G + T G QG G + PGDP P +RGS GPTG G
Sbjct: 1243 GKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPG 1297
>AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alpha 1
protein.
Length = 1860
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDP-LYHRPRTVNTRGSWGPTGQIG 528
GK G G + T G QG G + PGDP P +RGS GPTG G
Sbjct: 1243 GKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPG 1297
>AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alpha 1
protein.
Length = 1860
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDP-LYHRPRTVNTRGSWGPTGQIG 528
GK G G + T G QG G + PGDP P +RGS GPTG G
Sbjct: 1243 GKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPG 1297
>AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen
protein.
Length = 1670
Score = 32.7 bits (71), Expect = 1.5
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +1
Query: 526 GPICPVGPQ----DPRVLTVLGRWYSGSPGPTNTPGLP---*RPKPDHVXVGHLDPXTPR 684
GPI P GP DP L ++ GSPGP TPG P P P G+L P PR
Sbjct: 1334 GPIGPKGPPGVRGDPGTLKIIS--LPGSPGPPGTPGEPGMQGEPGPPG-PPGNLGPCGPR 1390
>AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein.
Length = 1084
Score = 32.7 bits (71), Expect = 1.5
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +1
Query: 526 GPICPVGPQ----DPRVLTVLGRWYSGSPGPTNTPGLP---*RPKPDHVXVGHLDPXTPR 684
GPI P GP DP L ++ GSPGP TPG P P P G+L P PR
Sbjct: 748 GPIGPKGPPGVRGDPGTLKIIS--LPGSPGPPGTPGEPGMQGEPGPPG-PPGNLGPCGPR 804
>AB058773-1|BAB47499.1| 832|Homo sapiens KIAA1870 protein protein.
Length = 832
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDP-LYHRPRTVNTRGSWGPTGQIG 528
GK G G + T G QG G + PGDP P +RGS GPTG G
Sbjct: 215 GKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPG 269
>L22548-1|AAA51864.1| 684|Homo sapiens collagen type XVIII alpha 1
protein.
Length = 684
Score = 32.3 bits (70), Expect = 2.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRP--RTVNTRGSWGPTGQIGP 525
GRQG PG PG P + P +T++ G GP G GP
Sbjct: 326 GRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 364
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +1
Query: 538 PVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFP 690
P GPQ P + GR G PGP PG P P P + P P P
Sbjct: 313 PPGPQGPPGIGYEGR--QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 361
>BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, alpha
1 protein.
Length = 1336
Score = 32.3 bits (70), Expect = 2.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRP--RTVNTRGSWGPTGQIGP 525
GRQG PG PG P + P +T++ G GP G GP
Sbjct: 979 GRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1017
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +1
Query: 538 PVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFP 690
P GPQ P + GR G PGP PG P P P + P P P
Sbjct: 966 PPGPQGPPGIGYEGR--QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1014
>BC052575-1|AAH52575.1| 1028|Homo sapiens collagen, type VI, alpha 1
protein.
Length = 1028
Score = 32.3 bits (70), Expect = 2.0
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPR-TVNTRGSWGPTGQIGPQ 522
Q G+ G G + G G+PG GPG+ PR T TRG G G+ GPQ
Sbjct: 396 QPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPGE---RGPRGTPGTRGPRGDPGEAGPQ 451
>BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, type
XVIII, alpha 1 protein.
Length = 816
Score = 32.3 bits (70), Expect = 2.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRP--RTVNTRGSWGPTGQIGP 525
GRQG PG PG P + P +T++ G GP G GP
Sbjct: 459 GRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 497
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +1
Query: 538 PVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFP 690
P GPQ P + GR G PGP PG P P P + P P P
Sbjct: 446 PPGPQGPPGIGYEGR--QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 494
>AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen middle
variant protein.
Length = 1516
Score = 32.3 bits (70), Expect = 2.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRP--RTVNTRGSWGPTGQIGP 525
GRQG PG PG P + P +T++ G GP G GP
Sbjct: 1159 GRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1197
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +1
Query: 538 PVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFP 690
P GPQ P + GR G PGP PG P P P + P P P
Sbjct: 1146 PPGPQGPPGIGYEGR--QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1194
>AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen long
variant protein.
Length = 1751
Score = 32.3 bits (70), Expect = 2.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRP--RTVNTRGSWGPTGQIGP 525
GRQG PG PG P + P +T++ G GP G GP
Sbjct: 1394 GRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1432
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +1
Query: 538 PVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFP 690
P GPQ P + GR G PGP PG P P P + P P P
Sbjct: 1381 PPGPQGPPGIGYEGR--QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1429
>AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen short
variant protein.
Length = 1336
Score = 32.3 bits (70), Expect = 2.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRP--RTVNTRGSWGPTGQIGP 525
GRQG PG PG P + P +T++ G GP G GP
Sbjct: 979 GRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1017
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +1
Query: 538 PVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFP 690
P GPQ P + GR G PGP PG P P P + P P P
Sbjct: 966 PPGPQGPPGIGYEGR--QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1014
>AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collagen
protein.
Length = 1519
Score = 32.3 bits (70), Expect = 2.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRP--RTVNTRGSWGPTGQIGP 525
GRQG PG PG P + P +T++ G GP G GP
Sbjct: 1162 GRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1200
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +1
Query: 538 PVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFP 690
P GPQ P + GR G PGP PG P P P + P P P
Sbjct: 1149 PPGPQGPPGIGYEGR--QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1197
>AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen protein.
Length = 1336
Score = 32.3 bits (70), Expect = 2.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRP--RTVNTRGSWGPTGQIGP 525
GRQG PG PG P + P +T++ G GP G GP
Sbjct: 979 GRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1017
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +1
Query: 538 PVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFP 690
P GPQ P + GR G PGP PG P P P + P P P
Sbjct: 966 PPGPQGPPGIGYEGR--QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1014
>AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen protein.
Length = 1516
Score = 32.3 bits (70), Expect = 2.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRP--RTVNTRGSWGPTGQIGP 525
GRQG PG PG P + P +T++ G GP G GP
Sbjct: 1159 GRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1197
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +1
Query: 538 PVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFP 690
P GPQ P + GR G PGP PG P P P + P P P
Sbjct: 1146 PPGPQGPPGIGYEGR--QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1194
>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens cDNA
FLJ46149 fis, clone TESTI4000621, moderately similar to
Homo sapiens Snf2-related CBP activator protein (SRCAP).
).
Length = 2427
Score = 31.9 bits (69), Expect = 2.7
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 492 VLAINKLVKILGPYLPCRPPGP--TSIDRPGPMVQWVPGPY*YTRAPLTAEAXPCXSRTP 665
V+ +N LGP PPGP ++ PGP+ Q +P + +P P SR P
Sbjct: 1009 VVVVNNPRAPLGPVPVRPPPGPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPA-SRPP 1067
Query: 666 GPL 674
GP+
Sbjct: 1068 GPV 1070
>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
SRCAP protein.
Length = 2971
Score = 31.9 bits (69), Expect = 2.7
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 492 VLAINKLVKILGPYLPCRPPGP--TSIDRPGPMVQWVPGPY*YTRAPLTAEAXPCXSRTP 665
V+ +N LGP PPGP ++ PGP+ Q +P + +P P SR P
Sbjct: 812 VVVVNNPRAPLGPVPVRPPPGPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPA-SRPP 870
Query: 666 GPL 674
GP+
Sbjct: 871 GPV 873
>AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.
Length = 3053
Score = 31.9 bits (69), Expect = 2.7
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 492 VLAINKLVKILGPYLPCRPPGP--TSIDRPGPMVQWVPGPY*YTRAPLTAEAXPCXSRTP 665
V+ +N LGP PPGP ++ PGP+ Q +P + +P P SR P
Sbjct: 990 VVVVNNPRAPLGPVPVRPPPGPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPA-SRPP 1048
Query: 666 GPL 674
GP+
Sbjct: 1049 GPV 1051
>X98568-1|CAA67178.1| 680|Homo sapiens type X collagen protein.
Length = 680
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+ G+R P G G PG PG P P + T+G GPTG GP
Sbjct: 443 GAPGIPGTRGPIGPP---GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGP 494
>X72579-1|CAA51170.1| 680|Homo sapiens collagen X protein.
Length = 680
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+ G+R P G G PG PG P P + T+G GPTG GP
Sbjct: 443 GAPGIPGTRGPIGPP---GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGP 494
>X65120-1|CAA46236.1| 629|Homo sapiens alpha1(X)collagen protein.
Length = 629
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+ G+R P G G PG PG P P + T+G GPTG GP
Sbjct: 392 GAPGIPGTRGPIGPP---GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGP 443
>X60382-1|CAA42933.1| 680|Homo sapiens collagen subunit (alpha-1
(X)) 3 protein.
Length = 680
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+ G+R P G G PG PG P P + T+G GPTG GP
Sbjct: 443 GAPGIPGTRGPIGPP---GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGP 494
>L13738-1|AAA53570.2| 1036|Homo sapiens activated p21cdc42Hs kinase
protein.
Length = 1036
Score = 31.1 bits (67), Expect = 4.7
Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Frame = +3
Query: 528 PYLPCRPPGPTSIDRPGP--MVQWVPGPY*YTRAPLTAEAXPCXSRTPGPL-XTSFSVLP 698
P P RP S PG QW PGP R P P SRTP PL S LP
Sbjct: 745 PPRPTRPHVQLSPAPPGEEETSQW-PGPASPPRVPPREPLSPQGSRTPSPLVPPGSSPLP 803
Query: 699 XRFAVXP 719
R + P
Sbjct: 804 PRLSSSP 810
>BC130623-1|AAI30624.1| 680|Homo sapiens collagen, type X, alpha
1(Schmid metaphyseal chondrodysplasia) protein.
Length = 680
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+ G+R P G G PG PG P P + T+G GPTG GP
Sbjct: 443 GAPGIPGTRGPIGPP---GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGP 494
>BC130621-1|AAI30622.1| 680|Homo sapiens collagen, type X, alpha
1(Schmid metaphyseal chondrodysplasia) protein.
Length = 680
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+ G+R P G G PG PG P P + T+G GPTG GP
Sbjct: 443 GAPGIPGTRGPIGPP---GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGP 494
>BC117170-1|AAI17171.1| 1714|Homo sapiens collagen, type XXIV, alpha
1 protein.
Length = 1714
Score = 31.1 bits (67), Expect = 4.7
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G GSPG++ G G P + RGS GP G IGP
Sbjct: 663 GLDGSPGLVGGTGPPGFP-----GLRGSVGPVGPIGP 694
>BC116180-1|AAI16181.1| 846|Homo sapiens COL24A1 protein protein.
Length = 846
Score = 31.1 bits (67), Expect = 4.7
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G GSPG++ G G P + RGS GP G IGP
Sbjct: 663 GLDGSPGLVGGTGPPGFP-----GLRGSVGPVGPIGP 694
>BC113654-1|AAI13655.1| 1714|Homo sapiens collagen, type XXIV, alpha
1 protein.
Length = 1714
Score = 31.1 bits (67), Expect = 4.7
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G GSPG++ G G P + RGS GP G IGP
Sbjct: 663 GLDGSPGLVGGTGPPGFP-----GLRGSVGPVGPIGP 694
>AY244357-1|AAP80185.1| 1714|Homo sapiens alpha 1 type XXIV collagen
precursor protein.
Length = 1714
Score = 31.1 bits (67), Expect = 4.7
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G GSPG++ G G P + RGS GP G IGP
Sbjct: 663 GLDGSPGLVGGTGPPGFP-----GLRGSVGPVGPIGP 694
>AL445427-1|CAI19120.1| 1714|Homo sapiens collagen, type XXIV, alpha
1 protein.
Length = 1714
Score = 31.1 bits (67), Expect = 4.7
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G GSPG++ G G P + RGS GP G IGP
Sbjct: 663 GLDGSPGLVGGTGPPGFP-----GLRGSVGPVGPIGP 694
>AL359971-1|CAI16233.1| 1714|Homo sapiens collagen, type XXIV, alpha
1 protein.
Length = 1714
Score = 31.1 bits (67), Expect = 4.7
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G GSPG++ G G P + RGS GP G IGP
Sbjct: 663 GLDGSPGLVGGTGPPGFP-----GLRGSVGPVGPIGP 694
>AL356059-1|CAH71121.1| 1714|Homo sapiens collagen, type XXIV, alpha
1 protein.
Length = 1714
Score = 31.1 bits (67), Expect = 4.7
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G GSPG++ G G P + RGS GP G IGP
Sbjct: 663 GLDGSPGLVGGTGPPGFP-----GLRGSVGPVGPIGP 694
>AL121963-4|CAB87590.1| 680|Homo sapiens collagen type X alpha 1
protein.
Length = 680
Score = 31.1 bits (67), Expect = 4.7
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+ G+R P G G PG PG P P + T+G GPTG GP
Sbjct: 443 GAPGIPGTRGPIGPP---GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGP 494
>AK131539-1|BAD18675.1| 1086|Homo sapiens protein ( Homo sapiens cDNA
FLJ16772 fis, clone BRAWH3043827, highly similar to Homo
sapiens activated p21cdc42Hs kinase (ACK1). ).
Length = 1086
Score = 31.1 bits (67), Expect = 4.7
Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Frame = +3
Query: 528 PYLPCRPPGPTSIDRPGP--MVQWVPGPY*YTRAPLTAEAXPCXSRTPGPL-XTSFSVLP 698
P P RP S PG QW PGP R P P SRTP PL S LP
Sbjct: 824 PPRPTRPHVQLSPAPPGEEETSQW-PGPASPPRVPPREPLSPQGSRTPSPLVPPGSSPLP 882
Query: 699 XRFAVXP 719
R + P
Sbjct: 883 PRLSSSP 889
>S57132-1|AAB25797.1| 1186|Homo sapiens type XVI collagen alpha 1
chain protein.
Length = 1186
Score = 30.7 bits (66), Expect = 6.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRWYSGSPGPTNTPGLP 627
G + PVGP P R + G+PGP+ +PGLP
Sbjct: 977 GSMGPVGPPGPAG----ERGHPGAPGPSGSPGLP 1006
>M95610-1|AAA80977.1| 675|Homo sapiens alpha-2 IX collagen protein.
Length = 675
Score = 30.7 bits (66), Expect = 6.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 574 LGRWYSGSPGPTNTPGLP*RP 636
+GR + G PGP PGLP RP
Sbjct: 595 VGRGHPGMPGPPGIPGLPGRP 615
>M92642-1|AAA58427.1| 1603|Homo sapiens alpha-1 type XVI collagen
protein.
Length = 1603
Score = 30.7 bits (66), Expect = 6.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRWYSGSPGPTNTPGLP 627
G + PVGP P R + G+PGP+ +PGLP
Sbjct: 1394 GSMGPVGPPGPAG----ERGHPGAPGPSGSPGLP 1423
>AL050341-6|CAB81611.1| 689|Homo sapiens collagen type IX alpha 2
protein.
Length = 689
Score = 30.7 bits (66), Expect = 6.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 574 LGRWYSGSPGPTNTPGLP*RP 636
+GR + G PGP PGLP RP
Sbjct: 609 VGRGHPGMPGPPGIPGLPGRP 629
>AF019406-1|AAC33512.1| 689|Homo sapiens collagen type IX alpha 2
chain protein.
Length = 689
Score = 30.7 bits (66), Expect = 6.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 574 LGRWYSGSPGPTNTPGLP*RP 636
+GR + G PGP PGLP RP
Sbjct: 609 VGRGHPGMPGPPGIPGLPGRP 629
>AB209571-1|BAD92808.1| 1463|Homo sapiens alpha 1 type XVI collagen
precursor variant protein.
Length = 1463
Score = 30.7 bits (66), Expect = 6.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRWYSGSPGPTNTPGLP 627
G + PVGP P R + G+PGP+ +PGLP
Sbjct: 1254 GSMGPVGPPGPAG----ERGHPGAPGPSGSPGLP 1283
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 30.3 bits (65), Expect = 8.2
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPR-TVNTRGSWGPTGQIG 528
+ GKRG G PT G +G PG PG P+ RGS GP G G
Sbjct: 465 EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 521
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 30.3 bits (65), Expect = 8.2
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPR-TVNTRGSWGPTGQIG 528
+ GKRG G PT G +G PG PG P+ RGS GP G G
Sbjct: 465 EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 521
>U73778-1|AAC51244.1| 3063|Homo sapiens collagen type XII alpha-1
protein.
Length = 3063
Score = 30.3 bits (65), Expect = 8.2
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRW----------YSGSPGPTNTPGLP*RPKP 642
GP P GPQ P L++ G G PG T TPGLP P P
Sbjct: 2786 GPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 2834
>M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen
protein.
Length = 589
Score = 30.3 bits (65), Expect = 8.2
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPR-TVNTRGSWGPTGQIG 528
+ GKRG G PT G +G PG PG P+ RGS GP G G
Sbjct: 465 EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 521
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 30.3 bits (65), Expect = 8.2
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPR-TVNTRGSWGPTGQIG 528
+ GKRG G PT G +G PG PG P+ RGS GP G G
Sbjct: 41 EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 97
>J04177-1|AAA51891.1| 1806|Homo sapiens COL11A1 protein.
Length = 1806
Score = 30.3 bits (65), Expect = 8.2
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGD-PLYHRPRTVNTRGSWGPTGQIGP 525
G+RG+ G++ G G QG PG + PG+ + RG GP G GP
Sbjct: 1030 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLRGRPGPQGPPGP 1085
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 30.3 bits (65), Expect = 8.2
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPR-TVNTRGSWGPTGQIG 528
+ GKRG G PT G +G PG PG P+ RGS GP G G
Sbjct: 465 EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 521
>AL354664-1|CAH71310.1| 3063|Homo sapiens collagen type XII alpha 1
protein.
Length = 3063
Score = 30.3 bits (65), Expect = 8.2
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRW----------YSGSPGPTNTPGLP*RPKP 642
GP P GPQ P L++ G G PG T TPGLP P P
Sbjct: 2786 GPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 2834
>AL096771-3|CAI19908.1| 3063|Homo sapiens collagen type XII alpha 1
protein.
Length = 3063
Score = 30.3 bits (65), Expect = 8.2
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRW----------YSGSPGPTNTPGLP*RPKP 642
GP P GPQ P L++ G G PG T TPGLP P P
Sbjct: 2786 GPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 2834
>AL080250-2|CAI19898.1| 3063|Homo sapiens collagen type XII alpha 1
protein.
Length = 3063
Score = 30.3 bits (65), Expect = 8.2
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRW----------YSGSPGPTNTPGLP*RPKP 642
GP P GPQ P L++ G G PG T TPGLP P P
Sbjct: 2786 GPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 2834
>AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3
chain protein.
Length = 1745
Score = 30.3 bits (65), Expect = 8.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
+ G G G R P+ GR+G G PG P G+ GP G++GP+
Sbjct: 1302 EPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPD--GPPGRTGPMGARGPPGRVGPE 1357
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 30.3 bits (65), Expect = 8.2
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPR-TVNTRGSWGPTGQIG 528
+ GKRG G PT G +G PG PG P+ RGS GP G G
Sbjct: 462 EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 518
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 30.3 bits (65), Expect = 8.2
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPR-TVNTRGSWGPTGQIG 528
+ GKRG G PT G +G PG PG P+ RGS GP G G
Sbjct: 468 EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 524
>AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha 3
preproprotein variant protein.
Length = 1658
Score = 30.3 bits (65), Expect = 8.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
+ G G G R P+ GR+G G PG P G+ GP G++GP+
Sbjct: 1215 EPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPD--GPPGRTGPMGARGPPGRVGPE 1270
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,104,452
Number of Sequences: 237096
Number of extensions: 2615942
Number of successful extensions: 10609
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 5971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10378
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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