Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I08
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 35 0.057
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 35 0.075
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z93388-12|CAB07661.2| 294|Caenorhabditis elegans Hypothetical p... 33 0.23
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 33 0.23
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 33 0.23
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 33 0.23
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 33 0.30
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 32 0.40
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 32 0.40
AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen prot... 32 0.40
Z69662-1|CAA93499.1| 359|Caenorhabditis elegans Hypothetical pr... 31 0.70
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 31 0.70
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 31 0.93
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 31 0.93
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 31 0.93
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 31 0.93
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 31 0.93
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 31 0.93
U29244-13|AAC71083.1| 291|Caenorhabditis elegans Collagen prote... 31 0.93
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 31 0.93
Z75527-5|CAA99776.1| 340|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical pr... 31 1.2
U97403-7|AAB52475.2| 179|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical... 31 1.2
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 30 1.6
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 30 2.1
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 30 2.1
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 30 2.1
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 2.8
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 2.8
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 2.8
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 29 3.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 3.7
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 29 3.7
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 29 3.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 3.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 3.7
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 29 3.7
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 3.7
Z68005-4|CAA91992.2| 430|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 29 5.0
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 5.0
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 29 5.0
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 29 5.0
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 5.0
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 28 6.6
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 28 6.6
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 28 6.6
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 28 6.6
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 6.6
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 28 8.7
U88310-1|AAB42340.1| 663|Caenorhabditis elegans Hypothetical pr... 28 8.7
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 28 8.7
U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of ... 28 8.7
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 28 8.7
AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium cha... 28 8.7
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 28 8.7
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 35.1 bits (77), Expect = 0.057
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -3
Query: 704 SXWQXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
S Q G+ G G++ P+ G+ G+PG PG P P T G+ GP G GP
Sbjct: 173 SPGQDGQPGAPGNKGPS------GQNGNPGAPGAPGQPGQDAPSEPITPGAPGPQGAPGP 226
Query: 524 Q 522
Q
Sbjct: 227 Q 227
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 34.7 bits (76), Expect = 0.075
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
Q G+ G G++ P+ G G+PG PG P P T G+ GP G GPQ
Sbjct: 176 QDGQPGAPGNKGPS------GPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQ 227
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = -3
Query: 704 SXWQXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
S Q G+ G G++ P+ G G+PG PG P P T G+ GP G GP
Sbjct: 140 SPGQDGQPGAPGNKGPS------GPNGNPGAPGAPGQPGQDAPSEPITPGAPGPQGTPGP 193
Query: 524 Q 522
Q
Sbjct: 194 Q 194
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = -3
Query: 704 SXWQXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
S Q G+ G G++ P+ G G+PG PG P P T G+ GP G GP
Sbjct: 173 SPGQDGQPGAPGNKGPS------GPNGNPGAPGAPGQPGQDAPSEPITPGAPGPQGTPGP 226
Query: 524 Q 522
Q
Sbjct: 227 Q 227
>Z93388-12|CAB07661.2| 294|Caenorhabditis elegans Hypothetical
protein T10C6.4 protein.
Length = 294
Score = 33.1 bits (72), Expect = 0.23
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -3
Query: 461 ISIFFFFVGIALHRVVVVITTGASGQLHNT--PSLLSFHFTYLNSHNLPRSIII-YNKNY 291
I+ FFFFVGI L+ +++V + G + T P +L HF + S+ Y K +
Sbjct: 49 ITFFFFFVGIFLNTILIVSNSAIFGNISLTILPIMLGTHFLMAFNRFCASSMPFGYRKIF 108
Query: 290 SK 285
SK
Sbjct: 109 SK 110
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G G+PG PG P P T G+ GP G GPQ
Sbjct: 190 GPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQ 227
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G+ G G++ P+ G G+PG PG P T G GP G GP
Sbjct: 178 GQPGAPGNKGPSGPNGNPGAPGAPGQ---PGQDAPSEPITPGAPGPAGPAGPQGP 229
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G G+PG PG P P T G+ GP G GPQ
Sbjct: 190 GPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQ 227
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G+ G G++ P+ G G+PG PG P T G GP G GP
Sbjct: 178 GQPGAPGNKGPSGPNGNPGAPGAPGQ---PGQDAPSEPITPGAPGPAGPAGPQGP 229
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G G+PG PG P P T G+ GP G GPQ
Sbjct: 190 GPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQ 227
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G+ G G++ P+ G G+PG PG P T G GP G GP
Sbjct: 178 GQPGAPGNKGPSGPNGNPGAPGAPGQ---PGQDAPSEPITPGAPGPAGPAGPQGP 229
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G G+PG PG P P T G+ GP G GPQ
Sbjct: 190 GPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQ 227
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G+ G G++ P+ G G+PG PG P T G GP G GP
Sbjct: 178 GQPGAPGNKGPSGPNGNPGAPGAPGQ---PGQDAPSEPITPGAPGPAGPAGPQGP 229
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
Q G G GS+ P G G+PG + PG+P + G GP+G GPQ
Sbjct: 157 QPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGPSGAPGPQ 214
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 32.3 bits (70), Expect = 0.40
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGD--PL--YHRPRTVNTRGSWGPTGQIGPQ 522
G G+ GS P G GR+G PG + GPG+ P RP G GP G+ G +
Sbjct: 153 GPSGLPGSAGPA---GGNGRRGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGEPGTE 209
Query: 521 Y 519
Y
Sbjct: 210 Y 210
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 32.3 bits (70), Expect = 0.40
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGD--PL--YHRPRTVNTRGSWGPTGQIGPQ 522
G G+ GS P G GR+G PG + GPG+ P RP G GP G+ G +
Sbjct: 147 GPSGLPGSAGPA---GGNGRRGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGEPGTE 203
Query: 521 Y 519
Y
Sbjct: 204 Y 204
>AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen protein
72 protein.
Length = 205
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
Q G G G+ P GR+G PG GPG P R ++GS G G GP
Sbjct: 78 QNGNGGRPGNNGPMGQPGEPGREGQPGKAGGPGSP--GRDGIRGSKGSTGDKGPNGP 132
>Z69662-1|CAA93499.1| 359|Caenorhabditis elegans Hypothetical
protein F56D5.1 protein.
Length = 359
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
Q G G G++ PT T G +G PG + G+ + P ++G GP G G
Sbjct: 174 QPGGIGASGAKGPTGTRGTPGMKGPPGDTIIAGEGIKGPPGLQGSQGPKGPPGNSG 229
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 31.5 bits (68), Expect = 0.70
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLY----HRPRTVNTRGSWGPTGQIGPQ 522
G RG G P GR+G PG GPG P RP G GP G+ G +
Sbjct: 151 GPRGPPGEVGPAGPSGDNGRKGPPGPPGGPGGPGEGGDGGRPGNPGRPGPAGPRGEPGTE 210
Query: 521 Y 519
Y
Sbjct: 211 Y 211
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 31.1 bits (67), Expect = 0.93
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G+ V G P G G+PG PG P +RG+ GP+G GPQ
Sbjct: 155 GQDAVGGGPGPAGPQGPAGDAGAPGQAGAPGHPGAPGQGGQRSRGTPGPSGAPGPQ 210
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G GSPG PG+P +RG GP+G+ GPQ
Sbjct: 176 GDAGSPGQAGAPGNPGRPGQSGQRSRGLPGPSGRPGPQ 213
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +1
Query: 535 CPVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDH 648
CP GP P + R G PGP PG P P H
Sbjct: 89 CPAGPPGPPGASG-DRGLDGQPGPAGKPGQPGVAGPAH 125
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
G G PGV PGD L P RG+ GP G G
Sbjct: 479 GENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDG 514
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
G G PGV PGD L P RG+ GP G G
Sbjct: 478 GENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDG 513
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
G G PGV PGD L P RG+ GP G G
Sbjct: 478 GENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDG 513
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
G G PGV PGD L P RG+ GP G G
Sbjct: 479 GENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDG 514
>U29244-13|AAC71083.1| 291|Caenorhabditis elegans Collagen protein
74 protein.
Length = 291
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G QG PG PG + H+ +G GPTGQ G Q
Sbjct: 183 GPQGEPGSEGEPGADVEHQVGLPGPKGISGPTGQPGDQ 220
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Frame = -3
Query: 662 CPTXTWSGFGRQGSPGVLVGPG----DPLYHRPRTVNTRGSWGPTGQIGPQ 522
CP G QG PGV G + R T GS GP G +GPQ
Sbjct: 135 CPQGPQGPQGPQGKPGVRGMRGARGQGAMPGRDGTPGQPGSLGPVGPVGPQ 185
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
G G PGV PGD L P RG+ GP G G
Sbjct: 515 GENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDG 550
>Z75527-5|CAA99776.1| 340|Caenorhabditis elegans Hypothetical
protein C15C8.5 protein.
Length = 340
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 399 CSDDHDHSVKSDTDKEEENGNSEILT 476
C+ ++ H K++T EEEN N+EIL+
Sbjct: 134 CTSNYCHVTKTETFSEEENQNTEILS 159
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G+ G G P + GR G+PG PG P R V GS G G GP+
Sbjct: 167 GQSGNEGPTGPRGSPGNKGRDGNPGRDGSPGRPGRDGTRGVGQPGSPGQPGSRGPE 222
>Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical
protein M18.1 protein.
Length = 337
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
G G PG PG RP T + G GP GQ G
Sbjct: 192 GNDGRPGAPGAPGTRSVGRPGTAGSPGPQGPPGQNG 227
>U97403-7|AAB52475.2| 179|Caenorhabditis elegans Hypothetical
protein T10E9.8 protein.
Length = 179
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -3
Query: 347 TYLNSHNLPRSIIIYNKNYSKRSFRWIYTLQICQKL*IHRNVKQQK*LNKFSKNIEES 174
TYLN LP + NK YS W+Y IC + + N+ + LN++S + E S
Sbjct: 119 TYLNQ--LPGQFVNENKFYSVLGPFWMYLGAICLHITVAINMAFLQPLNEYSASFEVS 174
>AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical
protein Y57A10A.11 protein.
Length = 458
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G+ G PG PG+ + P +G+ GP G+ GP+
Sbjct: 352 GKDGEPGAPGAPGENVKEVPAIPGPQGTPGPRGRQGPR 389
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
Q G+ G G P G G+PG PG P R+ T G+ G G GP
Sbjct: 158 QDGQGGQPGPAGPAGPAGDAGAPGAPGQDGQPGAPGQDGQRSTGTPGAAGAPGPAGP 214
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
Q G RG G R P G+ G PG PG+P R+ T G+ G G GP
Sbjct: 162 QSGGRGPPGPRGPAGDAGSPGQPGHPG---SPGNPGRGGQRSRGTPGASGRPGPQGP 215
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDP-LYHRPRTVNTRGSWGPTGQIG 528
G+ G G G G QG PG PG P H P G GP GQ G
Sbjct: 175 GEAGTPGPVGEPGETGGPGPQGRPGQRGEPGQPGTVHTPGNPGRPGPQGPRGQQG 229
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
Q G+ G G P G G+PG PG P R+ T G+ G G GP
Sbjct: 158 QDGQGGQPGPAGPAGPAGDAGAPGAPGQDGQPGAPGQDGHRSTGTPGAAGAPGPAGP 214
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/57 (38%), Positives = 27/57 (47%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
Q G RG G R P G+ G PG PG+P R +RG GP+G+ GP
Sbjct: 162 QSGGRGPPGPRGPAGDAGSPGQPGHPG---SPGNPGRGGQR---SRGLPGPSGRPGP 212
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G GSPG PG+P RG GP+G GPQ
Sbjct: 178 GSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAPGPQ 215
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -3
Query: 671 GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
GS P G G+PG PG P P T G G +G GP
Sbjct: 183 GSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGP 231
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -3
Query: 671 GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
GS P G G+PG PG P P T G G +G GP
Sbjct: 178 GSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGP 226
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -3
Query: 671 GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
GS P G G+PG PG P P T G G +G GP
Sbjct: 178 GSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGP 226
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+PG GPG+P G GP G GP
Sbjct: 195 GNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGP 231
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPG-VLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
G G G R P G QG PG VL G RP V +RG G TG+ G
Sbjct: 172 GPPGPAGVRGPPGELGMRGPQGDPGKVLNGAPQGQPGRPGKVGSRGKAGHTGRDG 226
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+PG GPG+P G GP G GP
Sbjct: 195 GNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGP 231
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYH----RPRTVNTRGSWGPTGQIGPQ 522
G RG G P GR G PG G G P RP G GP G+ G +
Sbjct: 144 GPRGPSGLVGPAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGRPGPPGPRGEPGTE 203
Query: 521 Y 519
Y
Sbjct: 204 Y 204
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYH----RPRTVNTRGSWGPTGQIGPQ 522
G RG G P GR G PG G G P RP G GP G+ G +
Sbjct: 144 GPRGPSGLVGPAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGCPGPPGPRGEPGTE 203
Query: 521 Y 519
Y
Sbjct: 204 Y 204
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+PG GPG+P G GP G GP
Sbjct: 195 GNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGP 231
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G+PG GPG+P G GP G GP
Sbjct: 195 GNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGP 231
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -3
Query: 671 GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
G PT G G PG PG+P R +RG GP+G+ GPQ
Sbjct: 174 GPAGPTGPTGDAGAPGQPGHPGSPGNPGRGGQR---SRGLPGPSGRPGPQ 220
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G G PG G P TVN+ G GP G GP
Sbjct: 223 GNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGP 259
>Z68005-4|CAA91992.2| 430|Caenorhabditis elegans Hypothetical
protein F59F3.2 protein.
Length = 430
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +1
Query: 529 PICPVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RP 636
P CP PQ P L R +G PG TPG P RP
Sbjct: 152 PDCPPCPQGPPGEDGL-RGEAGEPGRPGTPGDPGRP 186
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
G G PG PG P + P + RG G +G+ G
Sbjct: 172 GEPGRPGTPGDPGRPGTNEPGGIGARGPRGQSGRTG 207
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
protein B0457.1b protein.
Length = 1012
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 316 VLLSTIKTIARGASGGYTPCR 254
VL+ T+ T+ + SGGY PCR
Sbjct: 709 VLVKTLCTVYQHTSGGYLPCR 729
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
protein B0457.1a protein.
Length = 1014
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 316 VLLSTIKTIARGASGGYTPCR 254
VL+ T+ T+ + SGGY PCR
Sbjct: 711 VLVKTLCTVYQHTSGGYLPCR 731
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G+ G G P G G+PG G P + R+ T G+ G G GP
Sbjct: 161 GQGGAPGPAGPEGPAGDAGAPGAPGAPGNDGQPGQNGQRSTGTPGAAGAPGPQGP 215
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 316 VLLSTIKTIARGASGGYTPCR 254
VL+ T+ T+ + SGGY PCR
Sbjct: 709 VLVKTLCTVYQHTSGGYLPCR 729
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 316 VLLSTIKTIARGASGGYTPCR 254
VL+ T+ T+ + SGGY PCR
Sbjct: 711 VLVKTLCTVYQHTSGGYLPCR 731
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = +1
Query: 526 GPICPVGPQDPRVLT-VLGRWYS----GSPGPTNTPGLP*RPKPD 645
GP P GP P G Y G PGP+ PG P +P PD
Sbjct: 256 GPPGPAGPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQPGPD 300
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -3
Query: 635 GRQGSPGVLVGPGDP-LYHRPRTVNTRGSWGPTGQIGP 525
G G PG GPG+P RP G GP G GP
Sbjct: 214 GEPGQPGEPGGPGEPGADGRPGHPGRAGPPGPPGDNGP 251
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein
36 protein.
Length = 307
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
Q G +G G + + + G+ G PG+ +GP P P V G GP GQ G
Sbjct: 174 QQGPKGPPGPKGKSQERAADGKNGEPGM-IGPPGP----PGGVGEPGPPGPAGQPG 224
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -3
Query: 695 QXGKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
Q G +G G + + + G+ G PG+ +GP P P V G GP GQ G
Sbjct: 174 QQGPKGPPGPKGKSQERAADGKNGEPGM-IGPPGP----PGGVGEPGPPGPAGQPG 224
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRWYS-----GSPGPTNTPGLP*RPKPD 645
GP P GP PR G G+PGP PG P P PD
Sbjct: 262 GPQGPPGPPGPRGKDGAGGEKGAPGDQGNPGPYGKPGQPGAPGPD 306
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/55 (34%), Positives = 22/55 (40%)
Frame = -3
Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGP 525
G+ G G + P G GSPG PG+ P T G GP G GP
Sbjct: 183 GQPGAAGDKGPAGPNGNPGAPGSPGK---PGEDGKSEPITPGAPGPAGPPGPQGP 234
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKP 642
GP P GP+ P L SG PGP G P P P
Sbjct: 218 GPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGP 256
>U88310-1|AAB42340.1| 663|Caenorhabditis elegans Hypothetical
protein C24G7.4 protein.
Length = 663
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -3
Query: 623 SPGVLVGPGDPLYHRPRTVN----TRGSWGPTGQIGPQYFN*FIYG*YLLISRCKNFRIS 456
S G+ V P +Y +TV RG+WG + P+ +N F+ S C+ I+
Sbjct: 301 SEGISVSPSRTVYSAIKTVTHNLLNRGNWGNCSENWPEGYNTFL---SYSASACRALCIA 357
Query: 455 IFF 447
FF
Sbjct: 358 QFF 360
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = +1
Query: 520 YWGPICPVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKPDHVXVGHLDPXTP 681
Y GP GP P + G G PGP PG P P P G +P P
Sbjct: 221 YPGPRGAPGPVGPPGVAEEGP--DGLPGPAGPPGKPGMPGPMGTPGGPGEPGIP 272
>U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of
potassium channelsprotein 16 protein.
Length = 555
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 595 SPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFP 690
S P+N P P P+ DH + +D PR P
Sbjct: 366 STRPSNPPMSPPSPREDHPFIFKMDAPAPRSP 397
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +1
Query: 526 GPICPVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RPKP 642
GP P GP+ P L SG PGP G P P P
Sbjct: 218 GPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGP 256
>AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium
channel subunit n2P16 protein.
Length = 555
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 595 SPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFP 690
S P+N P P P+ DH + +D PR P
Sbjct: 366 STRPSNPPMSPPSPREDHPFIFKMDAPAPRSP 397
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 592 GSPGPTNTPGLP*RPKPDHVXVGHLDPXTPRFPXCQ 699
G+PGPT PG P RP V +P P C+
Sbjct: 94 GAPGPTGEPGRPGRPGKPGVPGMPGNPGKPPQQPCE 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,842
Number of Sequences: 27780
Number of extensions: 366878
Number of successful extensions: 1914
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1875
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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