Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I05
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...   118   7e-28
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    91   2e-19
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    27   2.4  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     27   4.2  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   7.3  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   9.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.7  

>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score =  118 bits (285), Expect = 7e-28
 Identities = 55/101 (54%), Positives = 70/101 (69%)
 Frame = -2

Query: 581 ESKLLDMDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADEVKAWTIQKGTKA 402
           E +L +    E +   K+    S L KIIV GY AL L  +FT G DEV++WTI+KGTKA
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCGEDEVRSWTIRKGTKA 329

Query: 401 PQAAGRIHTDFEKGFIMAEVMHFKDFKEEGTEAACKAAGKY 279
           PQAAG IHTDFEK F++ E+MH++D  +  TE AC+AAGKY
Sbjct: 330 PQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKY 370



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 691 LSEKDYIRXXXXXXXXXKEWIDKNDPGSPLIPFS 590
           +SE+D++R         K+WID+N PG  LIP S
Sbjct: 233 MSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMS 266


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 45/100 (45%), Positives = 60/100 (60%)
 Frame = -2

Query: 581 ESKLLDMDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADEVKAWTIQKGTKA 402
           E +L  + P E        G  S L +II  GY AL L ++FTA    V+AWTI  G+KA
Sbjct: 286 EEQLFMLTPEEAAQECASLGKNSQLSEIICAGYSALNLIHYFTASEKIVQAWTIADGSKA 345

Query: 401 PQAAGRIHTDFEKGFIMAEVMHFKDFKEEGTEAACKAAGK 282
           P AAG IH+DF+K F+  EV+ F DF++  +  ACK+ GK
Sbjct: 346 PDAAGIIHSDFKKKFVAGEVIKFSDFEKYKSVDACKSVGK 385



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 691 LSEKDYIRXXXXXXXXXKEWIDKNDPGSPLIPFS 590
           + + DY+          KEW++KN  G  +IP S
Sbjct: 249 MDQDDYLSDEQEALKGIKEWVEKNSFGDQVIPLS 282


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 418 RKAQRLLKPQDVSTPTSRRVSSWPKSCISR 329
           RK Q+LL+P +    ++R +S W K+ + R
Sbjct: 286 RKVQKLLEPDENIELSTRTLSQWRKNYVER 315


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 451 LEQMKSKPGQFRKAQRLLKPQDVSTPTSRRVSSWPKSCISRT 326
           L+Q++ +P       +LL  Q++S PT +    + K+ +SR+
Sbjct: 25  LKQLEKEPSFVLAVLQLLSSQEISLPTQQAAVIYLKNRVSRS 66


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 345  FGHDETLLEVGVDTSCGLRSLCAFLNCPGF--DFICSSCEEILQLQSLISLN 494
            FG  E    +G  TS  ++     +NC  +   ++C  C  I+ + S IS+N
Sbjct: 1109 FGEMERDAVIGHGTSFLMQD--RLMNCSDYAQSWVCRDCGSIISIMSTISMN 1158


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 333 EMHDF-GHDETLLEVGVDTSCGLRSLC 410
           E+ DF    +TL+E+G+D+SC L + C
Sbjct: 245 EIIDFLEKSKTLVELGMDSSCSLVAEC 271


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 438  SQSLDNSERHKGSSSRRTYPHRLREGFHHGRSHA 337
            S+S   +ERH+ S+S R          HH   HA
Sbjct: 1283 SRSKSKAERHETSTSSRKSSKSGEHHHHHNEGHA 1316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,934
Number of Sequences: 5004
Number of extensions: 54846
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)