Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I04
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    31   0.19 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    27   3.0  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    26   5.3  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   5.3  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   9.3  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -1

Query: 503 PGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRA 324
           P CVV + N+P+    ++++  F +        +    E GQP G     +  P  A  A
Sbjct: 3   PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62

Query: 323 VK 318
           V+
Sbjct: 63  VR 64


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/82 (25%), Positives = 34/82 (41%)
 Frame = -1

Query: 476 VPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVKTHHLDTI 297
           VP   T +E   FF++F    D  +    + G+P G   V +     A  A  +    TI
Sbjct: 254 VPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE-SAVEATMSQPYITI 312

Query: 296 HERRITLNIL*RPRSSGEASED 231
           H + + +     P++S   S D
Sbjct: 313 HGKPVEVKRA-TPKASLRDSHD 333


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 403 ITSSCDNSNSEKNCRISSMVARNGTFS 483
           +T++ DN + EKN  ++  V++N T +
Sbjct: 456 VTTTADNKDEEKNDHVTEDVSQNSTIA 482


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 186 RASVGNRF--DVEARAEVFTGLPAAPGPLEDVEGDPALVDR 302
           R + G+RF    +A  E++TG     GPL  V+   ++ DR
Sbjct: 69  RTNEGDRFIPSRDASTELWTGFTKVEGPLTPVKKKQSVADR 109


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 428 FELSHDDVIRRYNERGQP 375
           F  +HDDV  RY+ R QP
Sbjct: 311 FTPNHDDVFLRYSYRNQP 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,812
Number of Sequences: 5004
Number of extensions: 33524
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)