Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I04
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0197 + 1554449-1555101,1555462-1555558 44 1e-04
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854... 31 1.0
06_03_1503 - 30621089-30621170,30621258-30621438,30621462-306215... 29 4.2
12_02_0846 - 23623624-23623784,23624076-23624258,23624601-236246... 29 5.5
07_03_0439 + 18212584-18213065,18214164-18215010 28 7.3
02_04_0518 + 23601355-23602498,23603481-23603779 28 7.3
06_01_1168 - 9949128-9950621 28 9.7
05_05_0263 - 23673014-23673697,23673772-23674188 28 9.7
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 28 9.7
04_01_0199 - 2377406-2377573,2377649-2377730,2378006-2378274,237... 28 9.7
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187... 28 9.7
01_01_0087 - 647434-647523,647582-648329,650477-650745 28 9.7
>11_01_0197 + 1554449-1555101,1555462-1555558
Length = 249
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = -1
Query: 494 VVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRT 345
V+ + +P+ AT ++I++FF E+EL+ ++V Y G+ TG+A V F T
Sbjct: 151 VLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEFPT 200
>02_02_0284 -
8547126-8547187,8547306-8547395,8547810-8547861,
8548209-8548284,8550513-8550632,8553334-8553423,
8553842-8554024,8554125-8554185,8554437-8554477,
8554563-8554727,8555699-8555776,8556137-8556282
Length = 387
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = -1
Query: 485 MENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVKTHHL 306
+ N+P +++ F F D + + G+P G A V F P+DA+ A +
Sbjct: 41 VRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDASEAQYHMNR 100
Query: 305 DTIHERRITL 276
+ R IT+
Sbjct: 101 QVVFGREITV 110
>06_03_1503 -
30621089-30621170,30621258-30621438,30621462-30621510,
30621777-30621842,30621976-30622014,30622414-30622779,
30623290-30623448,30623805-30623993,30624877-30625168,
30626251-30626597,30627239-30627433,30627518-30627798,
30629525-30629690
Length = 803
Score = 29.1 bits (62), Expect = 4.2
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Frame = +3
Query: 42 KKYLFTSSE*TNDASLKITIYIRASRNAQRPTVLSVKRHS-DTTGSLTNRASVGNRFDVE 218
K+YLF S N + + Y+ S+ ++ VL+ + DTT S +R GN F ++
Sbjct: 248 KQYLFVESGSKNTSFI---FYLDISKQSKELVVLTPCVYGIDTTAS--HR---GNHFYIK 299
Query: 219 ARAEVFTGLPAAPGPLEDVEGDPALVDRVEVVRLDGARRVEG------RPEGDTRV-ARR 377
R+E F PL++V L+ E V++ + E R G +V A R
Sbjct: 300 RRSEEFYNSELIACPLDNVAETTVLLPHRESVKIQSFQLFENHIAVYERQNGLPKVTAYR 359
Query: 378 LPALVVP 398
LPA P
Sbjct: 360 LPATGEP 366
>12_02_0846 -
23623624-23623784,23624076-23624258,23624601-23624641,
23624746-23624910,23625808-23625885,23626024-23626169
Length = 257
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = -1
Query: 485 MENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVKTHHL 306
+ N+P +++ F F D + + G+P G A V F P+DA+ A +
Sbjct: 41 VRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYHMNR 100
Query: 305 DTIHERRITL 276
R IT+
Sbjct: 101 QVFFGREITV 110
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 246 PAAPGPLEDVEGDPALVDRVEVVRLDGARRVEGRPE 353
PA G +EDVEG AL RV ++G V P+
Sbjct: 276 PAVEGAVEDVEGGGALPLRVRPAVVEGGVGVGAEPQ 311
>02_04_0518 + 23601355-23602498,23603481-23603779
Length = 480
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -1
Query: 506 APGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATR 327
+P + ++NVP RA DE+ + FS F + GQ G A ++ P T+
Sbjct: 188 SPDRKLFVDNVPARAAHDELRRLFSRFGEIEAGPLGADRATGQFRGYAIFFYKYPEGLTK 247
Query: 326 AVK 318
A++
Sbjct: 248 ALE 250
>06_01_1168 - 9949128-9950621
Length = 497
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 458 WSRGTAHSPWRRRSPARRNLAAPG 529
W+RG SPWRRR R +AA G
Sbjct: 448 WARGWRSSPWRRRR-RRGKVAARG 470
>05_05_0263 - 23673014-23673697,23673772-23674188
Length = 366
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 285 PALVDRVEVVRLDGARRVEGRPEGDTRVARRLPALVVP 398
P LVDR + R+ RV +PE R LP+++VP
Sbjct: 21 PCLVDRRRMARVCRNWRVAVKPEQPRPGTRPLPSILVP 58
>05_04_0209 -
19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 305 DTIHERRITLNIL*RPRSSGEASEDLGPSFDIESVPNASPVC 180
D + +R L P +S A E L P+F + + P A+P C
Sbjct: 18 DEVPDRYAVLRAPQGPGASAAAKEYLDPTFPLPAPPPAAPSC 59
>04_01_0199 -
2377406-2377573,2377649-2377730,2378006-2378274,
2379648-2379788,2380891-2381076,2381529-2381765,
2382077-2382292,2382389-2382719,2382842-2382954,
2383288-2383602,2383713-2383840,2385274-2385547
Length = 819
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 434 SEFELSHDDVIRRYNERGQPTGDARVAFRT 345
S F L+ D+ IR Y ERG+ + RT
Sbjct: 76 SAFILTRDEAIRTYRERGETISGVEIIART 105
>01_06_0006 -
25517892-25517935,25518156-25518276,25518598-25518733,
25519189-25519280,25519358-25519426,25519710-25519821,
25519897-25520015,25520302-25520355,25520811-25520891,
25520968-25521051,25521124-25521315,25521633-25521746,
25521832-25521978,25522066-25522302,25522762-25522810,
25522894-25523027,25523124-25523324,25523532-25523701,
25523773-25523875,25524198-25524361,25525015-25525055,
25525144-25525187
Length = 835
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/73 (17%), Positives = 34/73 (46%)
Frame = -1
Query: 491 VSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVKTH 312
++++ +P+ + D+I+ FFS + D I + +E G V F + + +
Sbjct: 106 ITLDGLPWTVSNDDIVHFFSPYGTVVDHQITQKDENKLSEGSGFVLFSSELAVIKILSNG 165
Query: 311 HLDTIHERRITLN 273
+ + ++++N
Sbjct: 166 NTVNLGGEKVSIN 178
>01_01_0087 - 647434-647523,647582-648329,650477-650745
Length = 368
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 288 ALVDRVEVVRLDGARRVEGRPEGDTRVARRLPALVVP 398
ALVDRV ++ AR V +R R+L A V P
Sbjct: 25 ALVDRVRAGEVEAAREVRRLTRSSSRHRRKLAAAVEP 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,846,933
Number of Sequences: 37544
Number of extensions: 259355
Number of successful extensions: 882
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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