Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I04
(785 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 42 5e-04
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 41 0.001
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 41 0.001
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 38 0.006
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 31 0.71
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 30 2.2
U40946-3|AAO91681.1| 851|Caenorhabditis elegans Hypothetical pr... 28 6.6
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/83 (32%), Positives = 41/83 (49%)
Frame = -1
Query: 524 ALQDFGAPGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRT 345
A++ A +V M +P+ T +I FF +L+ D ++ G+PTGDA V F T
Sbjct: 272 AMEFVSANAIIVRMRGLPYDCTDAQIRTFFEPLKLT-DKILFITRTDGRPTGDAFVQFET 330
Query: 344 PFDATRAVKTHHLDTIHERRITL 276
DA + + H I +R I L
Sbjct: 331 EEDAQQGLLKHR-QVIGQRYIEL 352
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/83 (32%), Positives = 41/83 (49%)
Frame = -1
Query: 524 ALQDFGAPGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRT 345
A++ A +V M +P+ T +I FF +L+ D ++ G+PTGDA V F T
Sbjct: 272 AMEFVSANAIIVRMRGLPYDCTDAQIRTFFEPLKLT-DKILFITRTDGRPTGDAFVQFET 330
Query: 344 PFDATRAVKTHHLDTIHERRITL 276
DA + + H I +R I L
Sbjct: 331 EEDAQQGLLKHR-QVIGQRYIEL 352
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/83 (32%), Positives = 41/83 (49%)
Frame = -1
Query: 524 ALQDFGAPGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRT 345
A++ A +V M +P+ T +I FF +L+ D ++ G+PTGDA V F T
Sbjct: 272 AMEFVSANAIIVRMRGLPYDCTDAQIRTFFEPLKLT-DKILFITRTDGRPTGDAFVQFET 330
Query: 344 PFDATRAVKTHHLDTIHERRITL 276
DA + + H I +R I L
Sbjct: 331 EEDAQQGLLKHR-QVIGQRYIEL 352
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = -1
Query: 503 PGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRA 324
P +V + +PF T +I F + + D ++ +R +P G+A V F T ++ +
Sbjct: 121 PDSIVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFET-MESVQI 179
Query: 323 VKTHHLDTIHERRI 282
K H+ I R I
Sbjct: 180 AKQRHMKNIGHRYI 193
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = -1
Query: 503 PGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRA 324
P +V + +PF T +I F + + D ++ +R +P G+A V F T ++ +
Sbjct: 121 PDSIVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFET-MESVQI 179
Query: 323 VKTHHLDTIHERRI 282
K H+ I R I
Sbjct: 180 AKQRHMKNIGHRYI 193
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = -1
Query: 518 QDFGAPG---CVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAF 351
+D+GAP V+ M VPFRA+ ++ FF + +++R + + +P+GDARV F
Sbjct: 461 RDYGAPQNQHFVLRMRGVPFRASEADVYDFFHPIRPNQVELLRDHQFQ-RPSGDARVIF 518
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/66 (25%), Positives = 36/66 (54%)
Frame = -1
Query: 521 LQDFGAPGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTP 342
++ G G V+S P T++++++FF+++E + + R + G TG+ +A +
Sbjct: 864 IKSIGPRGTVLSCNGFPKDVTLEDVVEFFNDYEPDRNSIRIRRGDDGVMTGECMLACQNQ 923
Query: 341 FDATRA 324
+A RA
Sbjct: 924 ENARRA 929
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 33.1 bits (72), Expect = 0.23
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = -1
Query: 491 VSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVKTH 312
V + N PF+ T +E+ FFS ++ I E G+P G A + F A RAV+
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 311 HLDTIHERRITLNI 270
+ + R + +N+
Sbjct: 67 NGAEFNGRPLRVNL 80
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 31.9 bits (69), Expect = 0.53
Identities = 23/89 (25%), Positives = 38/89 (42%)
Frame = -1
Query: 500 GCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAV 321
G VV + N+ + + I + S+F +I +Y + G G A V F TP +A+ +
Sbjct: 262 GKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCI 321
Query: 320 KTHHLDTIHERRITLNIL*RPRSSGEASE 234
+ I + R+ L PR E
Sbjct: 322 EGVEDGVIIDNRLVKANLAIPRKEAADME 350
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 31.9 bits (69), Expect = 0.53
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = -1
Query: 500 GCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAV 321
G V + NVP++ T +EI +F+ ++ I E G+P G A V F A RAV
Sbjct: 5 GFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAV 64
Query: 320 KTHHLDTIHERRITLN 273
+ + + R + +N
Sbjct: 65 EQLNGVAFNGRNLRVN 80
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 31.5 bits (68), Expect = 0.71
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = -1
Query: 500 GCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAV 321
G V + N PF+ T D++ +FS+ + I E G+P G A V F A RAV
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 320 KTHHLDTIHERRITLNI 270
+ + R + +N+
Sbjct: 63 DQFNGVDFNGRALRVNL 79
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = -1
Query: 491 VSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVK 318
+ + +PF AT +I +FF+ + ++ G+P G+A V F+ +A +A++
Sbjct: 66 IRLRGLPFNATEKDIHEFFAGLTIER---VKFVCTTGRPNGEAYVEFKNTEEAGKAME 120
>U40946-3|AAO91681.1| 851|Caenorhabditis elegans Hypothetical
protein W05H9.2 protein.
Length = 851
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 385 RSLYRLITSSCDNSNSEKNCRISSMVAR 468
R + ++ SC SN EKNCR S +AR
Sbjct: 41 RRIDTVVGLSCTMSNLEKNCRDSQRLAR 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,282,242
Number of Sequences: 27780
Number of extensions: 205862
Number of successful extensions: 618
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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