Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I03
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   3.1  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   4.1  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    26   7.1  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   9.4  
SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.4  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   9.4  

>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 241 NSARDRYTVPWGFNGFINYI 300
           NS  DRYT+P+   G I+Y+
Sbjct: 339 NSGSDRYTIPFFLQGNIDYV 358


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 34   NMECTNHVYLLDSW 75
            N+ C NHV+++D W
Sbjct: 1048 NLTCANHVFIMDPW 1061


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 440 RFLSTYQFYLRVTSSATSEDINLDYFSNKAK 348
           R +S    Y+RV S+    +INL YF + AK
Sbjct: 497 RAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +2

Query: 626 ATRLHRSGDM*KRAGNKCXIQEWKGAPKPYARWTRYRRRPSLCASSDSDMSI 781
           A+ + +SG     AG    I+ WK    P  R T  +  P  C    +  SI
Sbjct: 191 ASEISKSGKYLATAGKDAIIRVWKVIETPERRETLLKEGPQSCGRFFTPSSI 242


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 240 KVKPGFEKYYVLSSFQCSSGCMYPNYTV 157
           K+  GF+K+Y    F C  G + P + +
Sbjct: 76  KIVSGFKKFYHNKPFLCDHGGILPKFEI 103


>SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 58 YLLDSWQYNVCDS 96
          Y+L +WQY +CDS
Sbjct: 22 YVLVNWQYAICDS 34


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 555 FDRFYKKFLVRIYRFTSLDAEQPQQQGCTGLEICENEQGTNVXYKSGRVLRN 710
           FDR  K+ L R+   T+LDA +   Q     +IC+    TN   + G +LRN
Sbjct: 257 FDRIEKEILKRVQPPTNLDAYRFDPQ-----QICQ----TNATKRQGWLLRN 299


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 414 IKLICR*KSQKKCSLLSPKIKHMCNKLIKYW 506
           IKLI +  S++  +L    I  +C+ LI YW
Sbjct: 249 IKLILKVLSERIDALSDAVIYELCDSLIPYW 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,377
Number of Sequences: 5004
Number of extensions: 63443
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)