Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I03
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)                    28   7.6  
SB_31145| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)
          Length = 486

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 724 PPCIGFRSTLPLLYXTFVPCSFSHISRPVQPCCCGC 617
           P C G   T  L Y  F PC+ + I RP+  C   C
Sbjct: 165 PKC-GKHLTKALCYHLFPPCTKNAIQRPIYICKAQC 199


>SB_31145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 294 IYETVEPPGYSVPVS--CGVKVKPGFEKYYVLSSFQCSSGCMYPNYTVVSLY*NVIISLS 121
           IY ++E PG +VP S  C V     F     L +++C       + T V  + ++++S+S
Sbjct: 10  IYASMETPGVAVPQSRICDVSTHDAFLLGQSLETYECKPN----DVTAVQCFVSILLSIS 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,818,681
Number of Sequences: 59808
Number of extensions: 480977
Number of successful extensions: 1035
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)