Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I02
         (1215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.98 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.98 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.98 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.98 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   6.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   6.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   6.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   6.9  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
            Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 1168 PPPPPPPPP 1194
            PPPPPPPPP
Sbjct: 306  PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 1169 PPPPPPPPP 1195
            PPPPPPPPP
Sbjct: 189  PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 1169 PPPPPPPPP 1195
            P PPPPPPP
Sbjct: 236  PAPPPPPPP 244


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 1169 PPPPPPPPP 1195
            PPPPPPPPP
Sbjct: 775  PPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 1169 PPPPPPPP 1192
            PPPPPPPP
Sbjct: 761  PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 1172 PPPPPPPP 1195
            PPPPPPPP
Sbjct: 761  PPPPPPPP 768


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 1169 PPPPPPPPP 1195
            PPPPPPPPP
Sbjct: 945  PPPPPPPPP 953


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 6.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 1171 PPPPPPP 1191
            PPPPPPP
Sbjct: 337  PPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 6.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 1177 PPPPPP 1194
            PPPPPP
Sbjct: 361  PPPPPP 366


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 1169 PPPPPPPP 1192
            PPPPPPPP
Sbjct: 9    PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 1172 PPPPPPPP 1195
            PPPPPPPP
Sbjct: 9    PPPPPPPP 16


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 1170 PPPPPPPP 1193
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1171 PPPPPPPP 1194
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 1170 PPPPPPPP 1193
            PPPPPPPP
Sbjct: 370  PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1171 PPPPPPPP 1194
            PPPPPPPP
Sbjct: 370  PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,059
Number of Sequences: 5004
Number of extensions: 23554
Number of successful extensions: 375
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)