Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I01
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1721 - 39426957-39428005,39428812-39428839 91 7e-19
06_03_0718 + 23840198-23840409,23841368-23841518,23842190-238422... 90 2e-18
05_04_0255 + 19462668-19462695,19463443-19464491 84 1e-16
08_01_0142 - 1121762-1122822,1123087-1123114 78 9e-15
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 77 2e-14
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 38 0.007
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 30 2.4
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969... 29 5.4
01_07_0322 + 42719853-42720512 29 5.4
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677... 28 7.2
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 28 9.5
>01_06_1721 - 39426957-39428005,39428812-39428839
Length = 358
Score = 91.5 bits (217), Expect = 7e-19
Identities = 44/99 (44%), Positives = 59/99 (59%)
Frame = -3
Query: 732 PGXTFLXRXQSEXXXSVHXNAINAVXLKXPWVLTFXYGRALQASVLRAWEGKTENILAGQ 553
P FL QSE +V+ NA+N + K PW L+F +GRALQ S L+AW GKTEN++ Q
Sbjct: 260 PAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRALQQSTLKAWGGKTENVVKAQ 319
Query: 552 QELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 436
+ I R KAN A +G Y ++ AS+S VK + Y
Sbjct: 320 KAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDYKY 358
>06_03_0718 +
23840198-23840409,23841368-23841518,23842190-23842294,
23843476-23843608,23844164-23844849,23844937-23845299
Length = 549
Score = 89.8 bits (213), Expect = 2e-18
Identities = 44/99 (44%), Positives = 58/99 (58%)
Frame = -3
Query: 732 PGXTFLXRXQSEXXXSVHXNAINAVXLKXPWVLTFXYGRALQASVLRAWEGKTENILAGQ 553
PG FL QSE S + NA+N + + PW LTF +GRALQ S ++ W GK EN+ A Q
Sbjct: 452 PGIVFLSGGQSEEEASQNLNAMNKLEVLKPWTLTFSFGRALQQSTIKKWGGKKENVAAAQ 511
Query: 552 QELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 436
+ R KAN A +GKY G+ A S+S +VK + Y
Sbjct: 512 AAFLARCKANSEATLGKY-GGAAGDAATSESLYVKGYTY 549
>05_04_0255 + 19462668-19462695,19463443-19464491
Length = 358
Score = 83.8 bits (198), Expect = 1e-16
Identities = 41/99 (41%), Positives = 56/99 (56%)
Frame = -3
Query: 732 PGXTFLXRXQSEXXXSVHXNAINAVXLKXPWVLTFXYGRALQASVLRAWEGKTENILAGQ 553
P FL QSE +++ NA+N + K PW L+F +GRALQ S L+AW GK ENI +
Sbjct: 260 PAIVFLSGGQSEEEATLNLNAMNKLSTKKPWSLSFSFGRALQQSTLKAWSGKAENIEKAR 319
Query: 552 QELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 436
+ R KAN A +G Y ++ AS+S VK + Y
Sbjct: 320 AAFLTRCKANSEATLGTYKGDAVLGEGASESLHVKDYKY 358
>08_01_0142 - 1121762-1122822,1123087-1123114
Length = 362
Score = 77.8 bits (183), Expect = 9e-15
Identities = 41/101 (40%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Frame = -3
Query: 732 PGXTFLXRXQSEXXXSVHXNAINAVXL--KXPWVLTFXYGRALQASVLRAWEGKTENILA 559
P FL QSE + + NA+N V K PW LTF +GRALQ S L+AW GK EN+
Sbjct: 262 PAIVFLSGGQSEEEATRNLNAMNQVASRGKKPWSLTFSFGRALQQSTLKAWAGKAENVGK 321
Query: 558 GQQELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 436
Q L+ R +AN A +G Y + S++ VK + Y
Sbjct: 322 AQAALLARCRANSQATLGAYAGDAAAGEGVSENLHVKDYKY 362
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 76.6 bits (180), Expect = 2e-14
Identities = 41/99 (41%), Positives = 57/99 (57%)
Frame = -3
Query: 732 PGXTFLXRXQSEXXXSVHXNAINAVXLKXPWVLTFXYGRALQASVLRAWEGKTENILAGQ 553
PG FL QSE + + NA+N PW ++F Y RALQ + L+ W G+ EN+ A Q
Sbjct: 293 PGIMFLSGGQSEVEATQNLNAMNQGP--NPWHVSFSYARALQNTCLKTWGGQPENVKAAQ 350
Query: 552 QELIKRAKANGLAAVGKYVAGSIPSLAASKSNFVKSHAY 436
L+ RAKAN LA +GKY + + A + FVK++ Y
Sbjct: 351 DALLLRAKANSLAQLGKYTSDG-EAAEAKEGMFVKNYVY 388
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -3
Query: 642 WVLTFXYGRALQASVLRAWEGKTENILAGQQELIKRAK 529
W ++F Y RALQ + L+ W + EN+ A Q EL A+
Sbjct: 372 WRVSFSYARALQNTCLKTWGSRRENVAAAQGELAGAAR 409
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 254 NTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 105
N F K ++ + +++ + YNFF + +V F YC ++ P +F
Sbjct: 322 NLFRKMLMEIKVTIWKKIHVIYNFFLIRKIIAHIVTFAFYC-LIIPATIF 370
>09_02_0473 -
9690050-9690802,9690891-9691423,9692202-9692776,
9693476-9693507
Length = 630
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 299 SIKMR*KYIFTYLLLNSLTKLN 364
++K R +YIFTYLL N +LN
Sbjct: 333 AVKKRDEYIFTYLLQNKAVELN 354
>01_07_0322 + 42719853-42720512
Length = 219
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 757 FXTXPAAVPRXDIPXPXSVRXGXLGAXERYQRCGPQXALGSDVQ 626
F P+ +PR P +R A E Y+R P AL D Q
Sbjct: 104 FPDSPSTLPRARTASPEDIRLAAAQAAELYRRPPPPLALPEDPQ 147
>06_01_0883 +
6768998-6769381,6769518-6769616,6769664-6769726,
6770883-6770931,6771338-6771405,6771463-6771715,
6772244-6772380,6772708-6772821,6773059-6773258,
6773367-6773561,6773650-6773812
Length = 574
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 203 FYFEYNFFSKYDALVWLVHFVLYCSIVFPYVV 108
FY Y+FF + +V F+LYC +V P+ V
Sbjct: 397 FYLLYSFFFVRKVVAHVVPFMLYC-VVIPFSV 427
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 212 TSNDLDELLFLGMYYEKKSFITSIIDGVKSIKMR 313
TS+ LD L G EKK I+S++DG + K R
Sbjct: 614 TSSLLDPLEVYGREDEKKLIISSLLDGCLTFKKR 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,616,249
Number of Sequences: 37544
Number of extensions: 280701
Number of successful extensions: 611
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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