Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_H23
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 117 2e-27
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 117 2e-27
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 84 3e-17
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 78 1e-15
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 35 0.016
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 29 0.59
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 27 3.1
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 9.6
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 9.6
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 117 bits (282), Expect = 2e-27
Identities = 55/124 (44%), Positives = 75/124 (60%)
Frame = -2
Query: 550 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 371
L SP++ V+ V E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESF
Sbjct: 719 LASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESF 778
Query: 370 GFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRTSEQALQRCTGNEKEERIEGRSPRLNSI 191
GFT +LR T GQAFPQ VFDHW + P+ + + Q K + ++ P
Sbjct: 779 GFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEY 838
Query: 190 FGQI 179
+ ++
Sbjct: 839 YDRL 842
Score = 80.2 bits (189), Expect = 3e-16
Identities = 38/61 (62%), Positives = 43/61 (70%)
Frame = -1
Query: 665 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP*SSC 486
LR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ ++
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAM 740
Query: 485 G 483
G
Sbjct: 741 G 741
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 117 bits (282), Expect = 2e-27
Identities = 55/124 (44%), Positives = 75/124 (60%)
Frame = -2
Query: 550 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 371
L SP++ V+ V E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESF
Sbjct: 719 LASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESF 778
Query: 370 GFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRTSEQALQRCTGNEKEERIEGRSPRLNSI 191
GFT +LR T GQAFPQ VFDHW + P+ + + Q K + ++ P
Sbjct: 779 GFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEY 838
Query: 190 FGQI 179
+ ++
Sbjct: 839 YDRL 842
Score = 80.2 bits (189), Expect = 3e-16
Identities = 38/61 (62%), Positives = 43/61 (70%)
Frame = -1
Query: 665 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP*SSC 486
LR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ ++
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAM 740
Query: 485 G 483
G
Sbjct: 741 G 741
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 83.8 bits (198), Expect = 3e-17
Identities = 41/92 (44%), Positives = 57/92 (61%)
Frame = -2
Query: 544 SPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGF 365
SP L V+ P ++ IY +L RRRGHV ++ G+P+++V+A +PV +S GF
Sbjct: 837 SPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGF 896
Query: 364 TADLRSNTGGQAFPQCVFDHWQVLPWRPVRTS 269
DLR +T GQA Q VFDHWQV+P P+ S
Sbjct: 897 ETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKS 928
Score = 73.3 bits (172), Expect = 4e-14
Identities = 32/56 (57%), Positives = 39/56 (69%)
Frame = -1
Query: 665 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP 498
+R V F + DV L + I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+ P
Sbjct: 797 IRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAP 852
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Frame = -2
Query: 487 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 308
+G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++ T G A+PQ +F
Sbjct: 878 LGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFH 937
Query: 307 HWQVLPWRP--VRTSEQALQ 254
+++L P V T+E+ L+
Sbjct: 938 GFEMLDENPFWVPTTEEELE 957
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 599 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 504
GQ+I + + L PRLM +Y C++Q
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQ 872
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.7 bits (76), Expect = 0.016
Identities = 17/71 (23%), Positives = 38/71 (53%)
Frame = -2
Query: 544 SPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGF 365
+P++ + V + P GG+ G L++R+ + + F ++A +P+N F +
Sbjct: 671 NPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSY 728
Query: 364 TADLRSNTGGQ 332
++D+R+ T G+
Sbjct: 729 SSDIRALTKGK 739
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 29.5 bits (63), Expect = 0.59
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 240 FPVQRCRACSEVRTGLQGRTCQWSNTHCGKACPPVLERKSAVKPNDS 380
+ + RC C E G C + C K C P + K K +DS
Sbjct: 414 YQIMRCALCGEFLKNAAGMQCIDCHYTCHKKCYPKVVTKCISKSSDS 460
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -2
Query: 550 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 371
+L ++W++Y FV + +P AV +Y R FE +I A + V+
Sbjct: 338 ILLKLIWNIYTFVYYGLPFFAVYRLYKQAGESRKLGFEAKYSLLRTCYIALAAVTVSNCL 397
Query: 370 GFTADLRSNTGGQ 332
F +R G Q
Sbjct: 398 -FLGVVRPLLGSQ 409
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 366 LLPICVPTPADRPSRSAYSTIGRSXPGDPC 277
+LP+ + TPA P + YS G S C
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTSIFNPVC 138
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -2
Query: 550 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHV 443
+ +PV + VP +A+ +G++N+R G +
Sbjct: 828 VFNPVTQGALLMYTILVPFIALSAAFGIMNKRLGGI 863
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,034
Number of Sequences: 5004
Number of extensions: 62733
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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