Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_H23
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 158 4e-39
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 158 4e-39
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 88 8e-18
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 88 8e-18
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 56 4e-08
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical ... 30 2.2
U70844-3|AAB09093.2| 209|Caenorhabditis elegans Hypothetical pr... 29 5.2
AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical ... 28 9.0
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 158 bits (384), Expect = 4e-39
Identities = 75/116 (64%), Positives = 84/116 (72%)
Frame = -2
Query: 541 PVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 362
P L V+ PE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFT
Sbjct: 732 PRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFT 791
Query: 361 ADLRSNTGGQAFPQCVFDHWQVLPWRPVRTSEQALQRCTGNEKEERIEGRSPRLNS 194
ADLRSNTGGQAFPQCVFDHWQVLP P+ + Q K + ++ P L++
Sbjct: 792 ADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVPALDN 847
Score = 103 bits (248), Expect = 1e-22
Identities = 45/61 (73%), Positives = 53/61 (86%)
Frame = -1
Query: 665 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP*SSC 486
+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCP ++
Sbjct: 691 MRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAV 750
Query: 485 G 483
G
Sbjct: 751 G 751
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 158 bits (384), Expect = 4e-39
Identities = 75/116 (64%), Positives = 84/116 (72%)
Frame = -2
Query: 541 PVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 362
P L V+ PE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFT
Sbjct: 732 PRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFT 791
Query: 361 ADLRSNTGGQAFPQCVFDHWQVLPWRPVRTSEQALQRCTGNEKEERIEGRSPRLNS 194
ADLRSNTGGQAFPQCVFDHWQVLP P+ + Q K + ++ P L++
Sbjct: 792 ADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVPALDN 847
Score = 103 bits (248), Expect = 1e-22
Identities = 45/61 (73%), Positives = 53/61 (86%)
Frame = -1
Query: 665 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP*SSC 486
+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCP ++
Sbjct: 691 MRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAV 750
Query: 485 G 483
G
Sbjct: 751 G 751
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 87.8 bits (208), Expect = 8e-18
Identities = 40/94 (42%), Positives = 57/94 (60%)
Frame = -2
Query: 550 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 371
+ +P L Y V+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SF
Sbjct: 826 MATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSF 885
Query: 370 GFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRTS 269
GF DLR +T GQAF F HWQ++P P+ S
Sbjct: 886 GFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKS 919
Score = 68.9 bits (161), Expect = 4e-12
Identities = 28/56 (50%), Positives = 38/56 (67%)
Frame = -1
Query: 665 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP 498
+R V+F + D + T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P
Sbjct: 788 IRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAP 843
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 87.8 bits (208), Expect = 8e-18
Identities = 40/94 (42%), Positives = 57/94 (60%)
Frame = -2
Query: 550 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 371
+ +P L Y V+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SF
Sbjct: 701 MATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSF 760
Query: 370 GFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRTS 269
GF DLR +T GQAF F HWQ++P P+ S
Sbjct: 761 GFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKS 794
Score = 68.9 bits (161), Expect = 4e-12
Identities = 28/56 (50%), Positives = 38/56 (67%)
Frame = -1
Query: 665 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP 498
+R V+F + D + T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P
Sbjct: 663 IRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAP 718
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 55.6 bits (128), Expect = 4e-08
Identities = 29/73 (39%), Positives = 39/73 (53%)
Frame = -2
Query: 490 AVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVF 311
A+G ++ VL++R+ V E T +F V + +PV ESF F LR T G A Q F
Sbjct: 769 ALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQF 828
Query: 310 DHWQVLPWRPVRT 272
HWQV+ P T
Sbjct: 829 SHWQVIDEDPYWT 841
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/58 (41%), Positives = 28/58 (48%)
Frame = -2
Query: 445 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRT 272
V E T +F V + +PV ESF F LR T G A Q F HWQV+ P T
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDPYWT 652
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -2
Query: 514 VKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 335
V+ +VP G + L +R + G I +A P+++ FG+T++LRS T G
Sbjct: 649 VEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELRSLTEG 706
Query: 334 Q 332
+
Sbjct: 707 K 707
>AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical
protein T24A6.11 protein.
Length = 359
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 56 LLSHLRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 175
+L+ LR+C+ C + TC K FP ++V L+ ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328
>U70844-3|AAB09093.2| 209|Caenorhabditis elegans Hypothetical
protein ZK154.1 protein.
Length = 209
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 521 YLCEIQCP*SSCGWYLRCTEQTSWSRFRRVPGGRYTYV 408
Y C +QC W +C E TS+S FR GR T+V
Sbjct: 42 YTCAVQCE-----WRKQCNEHTSFSTFR----GRRTFV 70
>AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical
protein Y106G6H.5 protein.
Length = 855
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 180 ICPNIELSLGDLPSI-LSSFSFPVQRCRACSEVRTGLQGRTCQWSNTHCGK 329
I P+ +GD+ + +SS FP RC+ E+ G+ S THCG+
Sbjct: 615 IGPSSRYLMGDITGLSMSSNDFPTFRCQ---EINIGMATGIRAISVTHCGE 662
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,048,748
Number of Sequences: 27780
Number of extensions: 366890
Number of successful extensions: 917
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -