Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H22
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.38 
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   2.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   2.7  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   2.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   2.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   4.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   4.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 560 SLVGGLLDSGNVEDTVGIDVEG-DLN 634
           SL GGL D G V   V +D  G D+N
Sbjct: 463 SLAGGLYDEGTVRRRVAVDRSGIDIN 488


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 582 SRSPPTREQDHHYQRQRSSLQGRDRAY 502
           SR+   +    HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 582 SRSPPTREQDHHYQRQRSSLQGRDRAY 502
           SR+   +    HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 582 SRSPPTREQDHHYQRQRSSLQGRDRAY 502
           SR+   +    HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 582 SRSPPTREQDHHYQRQRSSLQGRDRAY 502
           SR+   +    HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 582 SRSPPTREQDHHYQRQRSSLQGRDRAY 502
           SR+   +    HY R+RS  + R+R Y
Sbjct: 208 SRTHGFQHTSSHYSRERSCSRDRNREY 234


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 582 SRSPPTREQDHHYQRQRSSLQGRDRAY 502
           SR+   +    HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 22/96 (22%), Positives = 36/96 (37%)
 Frame = -1

Query: 608 QRYPQRFRYREVHQQENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNAL 429
           +R   R R RE  +      + N+K +L +E   R        RN   +++E    KN  
Sbjct: 1   ERSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRK-------RNSRSREREQNSYKNER 53

Query: 428 ESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTI 321
           E   +   S        E+    + + I    N+TI
Sbjct: 54  EYRKYRETSKERSRDRTERERSREPKIISSLSNNTI 89


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 22/96 (22%), Positives = 36/96 (37%)
 Frame = -1

Query: 608 QRYPQRFRYREVHQQENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNAL 429
           +R   R R RE  +      + N+K +L +E   R        RN   +++E    KN  
Sbjct: 1   ERSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRK-------RNSRSREREQNSYKNER 53

Query: 428 ESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTI 321
           E   +   S        E+    + + I    N+TI
Sbjct: 54  EYRKYRETSKERSRDRAERERSREPKIISSLSNNTI 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,342
Number of Sequences: 438
Number of extensions: 4211
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)