Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H18
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    31   0.26 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.35 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    30   0.46 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    30   0.46 
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    29   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   3.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.2  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   7.5  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   9.9  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   9.9  

>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
 Frame = -1

Query: 733 CPYRSPTP----VVKHVGVPVXCPSTGPTPVHVPAPYPVE---KPVPFAVPVEKP 590
           C Y  P P      K   +P    S+  +P+ +P PYPV+   +PV    P+  P
Sbjct: 137 CSYCEPLPNHLTKTKSCSIPPILNSSDRSPLSLPTPYPVQYSTQPVSLPQPIAAP 191


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
 Frame = -1

Query: 751 PPS-KLRCPYRSPTPVVKHVG--VPVXCPSTGPTPVHVPAPYPVEKPVPFAVPVEKPVAY 581
           PPS  +  P   P P    +   +P   P+  P P   PAP P   P P A PV      
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP-AAPVASIAEL 494

Query: 580 P 578
           P
Sbjct: 495 P 495



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 812 PLPRQGSSAPTXPPWRNTCHT 750
           PLP QG SAP  PP R+   T
Sbjct: 352 PLPPQGRSAPPPPPPRSAPST 372


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 664 PTPVHVPAPYPVEKPVPFAVPVEKPVAYPVHVPVDRP 554
           P  V  P P PV +P P A P ++ V      P  RP
Sbjct: 889 PVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPATRP 925


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -1

Query: 730 PYRSPTPVVKHVGVPVXCPSTGPTPVHVPAPYPVEKPVPFAVPVEKPVAYPVHVP 566
           P  SP+ +   V  PV   +  P P  +P P P    V      +  + +  H+P
Sbjct: 581 PNASPSVIPPRVPTPVPGRTLSPKPTRIPTPIPSSLNVSLESSKKPEIFHERHIP 635


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 180 AISKIRSTIF*NVYFFYLCHVC 115
           A+  I S IF N +FFYLC  C
Sbjct: 27  ALVIILSVIFINFFFFYLCRCC 48


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -1

Query: 718  PTPVVKHVGVPVXCPSTGPTPVHVPAP-YPVEKPVPFAVPVEKP 590
            P P       PV  PS+G  PV  PA   P   P   A PV KP
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 23/59 (38%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = -1

Query: 718  PTPVVKHVGVPVXCPSTGPTPVHVP--APYPVEKPVPFAVPVEKPVA--YPVHVPVDRP 554
            P P       PV  PS  P PV  P  A  PV  P     PV KP A   PV  P + P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAP-PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = -1

Query: 754  IPPSKLRCPYRSPTPVVKHVGVPVXCPSTGPTPVHVP-APYPVEKPVPFAVPVEKPVAYP 578
            +PP         P P+      P+  PST P PV +P +  PV K    A     PV  P
Sbjct: 1011 VPPVPKLSSKAPPVPLPSADAPPIPVPSTAP-PVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 667 GP-TPVHVPAPYPVEKPVPFAVPVEK 593
           GP +PV  PA  PVE  VP  +P  K
Sbjct: 44  GPASPVTAPAAQPVESSVPLPLPKRK 69


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -1

Query: 751 PPSKLRCPYRSPTPVVKHVGVPVXCPSTGPTPVHVPAPYPVEKPVPFAVPVEKPVAYPVH 572
           PP+  +   R PT       +P   P++ P P+   AP     P+P ++P     A PV 
Sbjct: 130 PPTP-QSELRPPTSAPPRPSIPPPSPASAP-PIPSKAP-----PIPSSLPPPAQPAAPVK 182

Query: 571 VPVDRP 554
            P   P
Sbjct: 183 SPPSAP 188


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 691 VPVXCPSTGPTPVHVPAPYP 632
           VP     TGPT V+V  PYP
Sbjct: 258 VPHSGNETGPTTVYVETPYP 277



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 691 VPVXCPSTGPTPVHVPAPYP 632
           VP     TGPT V+V  PYP
Sbjct: 336 VPHSGNETGPTTVYVETPYP 355



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 691 VPVXCPSTGPTPVHVPAPYP 632
           VP     TGPT V+V  PYP
Sbjct: 414 VPHSGNETGPTTVYVETPYP 433



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 691 VPVXCPSTGPTPVHVPAPYP 632
           VP     TGPT V+V  PYP
Sbjct: 492 VPHSGNETGPTTVYVETPYP 511



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 691 VPVXCPSTGPTPVHVPAPYP 632
           VP     TGPT V+V  PYP
Sbjct: 570 VPHSGNETGPTTVYVETPYP 589



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 691 VPVXCPSTGPTPVHVPAPYP 632
           VP     TGPT V+V  PYP
Sbjct: 648 VPHSGNETGPTTVYVETPYP 667


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
 Frame = +2

Query: 503 HWHLYGNGHGLLNV-----HGVR--SVDRNMDGVGHWLLNWDSKRHWLLDGVRSRHMHGG 661
           H+  YGN H   N      HG    +   N +  GH     +S+R++   G    +M  G
Sbjct: 303 HYDRYGNSHPSYNKYSHYQHGFNYNNSGNNRNESGHPRFR-NSRRNYNNQGAYPTYMSNG 361

Query: 662 RACRRAXDGDTDVLHNGGRAAVRAP*LRRGYGTCFSTGVXLGHWNLDGVGDVL 820
           R+  ++   +   ++NG         L+  YG  +     +   N+   G +L
Sbjct: 362 RSANQSPRNNPQNVNNGSTPIQIPVSLQTPYGQVYGQPQYIVDPNMVQYGPIL 414


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 206 MNISPSTAGPSAKFDPLSFKMYIFFIYVMYAER 108
           + +SPS   P  +F P S +M +   Y + A+R
Sbjct: 24  IEVSPSMLDPVDEFTPSSLQMALICAYQLAAQR 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,678
Number of Sequences: 5004
Number of extensions: 48048
Number of successful extensions: 195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)