Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H16
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1420 + 26448009-26448085,26448302-26448394,26448634-264487...    29   6.5  
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84...    29   6.5  
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652...    28   8.5  
03_02_0164 - 6066744-6067637                                           28   8.5  
01_06_1468 + 37574124-37574180,37574275-37574346,37574437-375745...    28   8.5  

>07_03_1420 +
           26448009-26448085,26448302-26448394,26448634-26448727,
           26448822-26448859,26448999-26449090,26449179-26449258,
           26449332-26449388,26449420-26449449,26449505-26449597,
           26449766-26449840,26449888-26449959
          Length = 266

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/81 (24%), Positives = 37/81 (45%)
 Frame = -2

Query: 385 TNLTESRSDRVSAVAHARVSETCAWFCKKNVHFVFLVKAIVNCAFVNMEIDNISRFSFPV 206
           T+    RS +V A      S+T A   ++N+ + FLV+       +  E+D++  FS   
Sbjct: 149 TDQVIERSKKVVAQTVEVGSQTAAALSQQNIPWTFLVRKTEQMKRIGNELDSV-HFSLKK 207

Query: 205 SNRLFSHTMRRPQCSVCI*LF 143
           ++++     R+     CI  F
Sbjct: 208 ASQMVKEIGRQVATDKCIMAF 228


>02_01_0112 -
           839048-839552,839638-839720,839828-839982,840078-840557,
           840855-841097,841189-841403,841489-841756,842477-842525
          Length = 665

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 732 RPKMEEAXDAXIKWLEDNQDAXSXXYXE 649
           + K+EEA    ++WL++NQ A    Y E
Sbjct: 597 KEKVEEALKEALEWLDENQTAEKEEYEE 624


>10_02_0192 +
           6517985-6518348,6518647-6518699,6519984-6520021,
           6522332-6522717,6523752-6523822,6524620-6524732,
           6525019-6525337,6525576-6525886,6526493-6527069,
           6530483-6530538,6531643-6532126
          Length = 923

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 490 GRDRLARRVSHARWMQCC*LECVYLLYECSEWACATNLTESRSDRVSAVAHARVSET 320
           G DRL RR SH+R   CC +E +  L+    W   + +   R+D   A  H  +  T
Sbjct: 273 GEDRLGRRESHSRG-PCCMVEAINPLW---RWFPLSMICILRND-PKAAPHVHIGHT 324


>03_02_0164 - 6066744-6067637
          Length = 297

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 617 PIIAXLYPRPGWSTAPGGAG 558
           P +A LY  P W T  GG G
Sbjct: 173 PTVAALYQHPSWPTMSGGGG 192


>01_06_1468 +
           37574124-37574180,37574275-37574346,37574437-37574513,
           37574897-37574978,37576005-37576069,37576313-37576354,
           37576452-37576503,37576631-37576679,37576784-37576797,
           37576942-37577049,37577129-37577272,37577421-37577810
          Length = 383

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 83  GTHNYLNYSANYELTNLQSLKQLNTYRTLRSSHSVRE*SIRYR 211
           G + YL YS++ ELT  QS    N  +  + S+++    ++Y+
Sbjct: 70  GRNVYLQYSSHQELTTDQSSHGRNPDQAFKPSYNISHVKVQYK 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,135,716
Number of Sequences: 37544
Number of extensions: 306790
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)