Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H16
         (875 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007050-1|AAP35699.1|  501|Homo sapiens chromodomain helicase D...    32   3.1  
BC007347-1|AAH07347.1|  501|Homo sapiens chromodomain helicase D...    32   3.1  
AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.                 32   3.1  
BC020810-1|AAH20810.1|  501|Homo sapiens chromodomain helicase D...    31   4.1  

>BT007050-1|AAP35699.1|  501|Homo sapiens chromodomain helicase DNA
           binding protein 2 protein.
          Length = 501

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -3

Query: 687 EDNQDAXSXXYXEPEEDA*RCGAAHHRXTLPKARVEYRP---RGRRKMTTSRTSCNQTES 517
           ED Q+  +    EPE+   +      R T+PK RV+ +P   RG+RK   S    +  + 
Sbjct: 157 EDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDDE 216

Query: 516 QPNVISAQMAA 484
            P   + + AA
Sbjct: 217 APKRQTRRRAA 227


>BC007347-1|AAH07347.1|  501|Homo sapiens chromodomain helicase DNA
           binding protein 2 protein.
          Length = 501

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -3

Query: 687 EDNQDAXSXXYXEPEEDA*RCGAAHHRXTLPKARVEYRP---RGRRKMTTSRTSCNQTES 517
           ED Q+  +    EPE+   +      R T+PK RV+ +P   RG+RK   S    +  + 
Sbjct: 157 EDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDDE 216

Query: 516 QPNVISAQMAA 484
            P   + + AA
Sbjct: 217 APKRQTRRRAA 227


>AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.
          Length = 1739

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -3

Query: 687 EDNQDAXSXXYXEPEEDA*RCGAAHHRXTLPKARVEYRP---RGRRKMTTSRTSCNQTES 517
           ED Q+  +    EPE+   +      R T+PK RV+ +P   RG+RK   S    +  + 
Sbjct: 157 EDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDDE 216

Query: 516 QPNVISAQMAA 484
            P   + + AA
Sbjct: 217 APKRQTRRRAA 227


>BC020810-1|AAH20810.1|  501|Homo sapiens chromodomain helicase DNA
           binding protein 2 protein.
          Length = 501

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -3

Query: 687 EDNQDAXSXXYXEPEEDA*RCGAAHHRXTLPKARVEYRP---RGRRKMTTSRTSCNQTES 517
           ED Q+  +    EPE+   +      R T+PK RV+ +P   RG+RK   S    +  + 
Sbjct: 157 EDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDDE 216

Query: 516 QPNVISAQMAA 484
            P   + + AA
Sbjct: 217 VPKRQTRRRAA 227


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,693,418
Number of Sequences: 237096
Number of extensions: 1730388
Number of successful extensions: 4788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4788
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)