Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H16
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64599-4|AAB04562.1|  429|Caenorhabditis elegans Unidentified vi...    29   3.3  
M28528-1|AAA28076.1|  288|Caenorhabditis elegans protein ( C.ele...    29   3.3  
AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock pr...    29   3.3  
Z81524-4|CAB04250.1|  528|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U64599-4|AAB04562.1|  429|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 5, isoform a
           protein.
          Length = 429

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +1

Query: 283 IQNAHFFYRTRHTFHSHVRAQRQILDQISTL*GSSHTPTHCTHTINIHTRANNTASIVR 459
           +     F + +  +H+HV    +  +  +      HTP H +H+ + H +     SIVR
Sbjct: 225 VHTGEHFQQWQKIYHAHVNHTSRTNEHAAVFPSHHHTPEHRSHSAD-HPKIERKDSIVR 282


>M28528-1|AAA28076.1|  288|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 4 gene, 3' end. ).
          Length = 288

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -1

Query: 647 QKKTLEDVVQPIIAXLYPRPG 585
           QKK LE VVQPI++ LY   G
Sbjct: 252 QKKELESVVQPIVSKLYSAGG 272


>AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock
           protein protein 4 protein.
          Length = 657

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -1

Query: 647 QKKTLEDVVQPIIAXLYPRPG 585
           QKK LE VVQPI++ LY   G
Sbjct: 621 QKKELESVVQPIVSKLYSAGG 641


>Z81524-4|CAB04250.1|  528|Caenorhabditis elegans Hypothetical
           protein F32H5.4 protein.
          Length = 528

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 403 CTHTINIHTRANNTASIVRGTLAAQDDRGHLCGDHVWLRFSL 528
           C  + + H   N T +      +   D GH CG+  W++ S+
Sbjct: 82  CKSSFDFHNPPNCTITSKYDFYSINVDYGHFCGEGAWVKTSI 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,196
Number of Sequences: 27780
Number of extensions: 286317
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)