Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_H11
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0116 - 13022648-13022701,13022781-13022835,13023050-130231... 269 2e-72
12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580... 59 5e-09
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 26 0.50
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931... 31 1.5
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306... 30 2.6
04_04_1426 - 33471087-33471435,33471586-33471656 29 3.4
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193 29 4.5
02_05_0139 - 26194892-26195230 29 4.5
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 29 5.9
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 28 7.8
04_03_0257 + 13572526-13572731,13573104-13573299 28 7.8
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954... 28 7.8
01_07_0343 - 42866940-42867656 28 7.8
>10_07_0116 -
13022648-13022701,13022781-13022835,13023050-13023175,
13023274-13023340,13024104-13024200,13024362-13024461,
13024527-13024611,13024679-13024755,13024888-13024926,
13025001-13025038,13025118-13025208,13025536-13025628,
13025726-13025781,13025844-13025915,13026078-13026134,
13026397-13026495,13026599-13026964
Length = 523
Score = 269 bits (660), Expect = 2e-72
Identities = 126/191 (65%), Positives = 148/191 (77%)
Frame = -3
Query: 626 YGSQGYRYDWKIGEAQKNLLRTHTTAVSARMLYRLAQQTEFTPQKYFSIDKVFRNETLDA 447
YGS+GY YDWK EA+KNLLRTHTTAVS RMLY+LAQ+ F P++Y+SID+VFRNE +D
Sbjct: 354 YGSKGYGYDWKRDEAEKNLLRTHTTAVSTRMLYKLAQEKPFAPKRYYSIDRVFRNEAVDR 413
Query: 446 THLAEFHQVEGVVADRGLGLADLITVLDAFFKRLGFDQLQFKPAYNPYTEPSMEIFAYHT 267
THLAEFHQ+E G +L+FKPAYNPYTEPSMEIF+YH
Sbjct: 414 THLAEFHQIE------------------------GMSKLRFKPAYNPYTEPSMEIFSYHE 449
Query: 266 GLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLERPTMIKYGLNNIRDLVGPKVDL 87
GL KW+E+GNSG+FRPEMLLPMGLPE VNVIAWGLSLERPTMI YG++NIRDL GPKVD
Sbjct: 450 GLKKWVEVGNSGMFRPEMLLPMGLPEGVNVIAWGLSLERPTMILYGIDNIRDLFGPKVDF 509
Query: 86 RMVYNNPICRL 54
++ +NP+CRL
Sbjct: 510 NLIKSNPLCRL 520
Score = 51.2 bits (117), Expect = 1e-06
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 810 GFPXXPTXKYVXVHFX-IXRIVQPXQHPXRDAHDTFXMSSPAATTEFP 670
GF PT YV F + QP QHP RD+HDTF + +PAAT + P
Sbjct: 291 GFTEMPTNNYVESSFWNFDALFQPQQHPARDSHDTFFLEAPAATKQLP 338
>12_02_0617 +
21256745-21256943,21257454-21257647,21257836-21258042,
21258115-21258232,21258325-21258401,21258513-21258692,
21259312-21259356,21260309-21260413,21261115-21261261
Length = 423
Score = 58.8 bits (136), Expect = 5e-09
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 13/168 (7%)
Frame = -3
Query: 578 KNLLRTHTTAVSARMLYRLAQQTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGV---- 411
+ +LR HT+A A +L T F V+R +++D+TH FHQ+EG
Sbjct: 156 QTVLRCHTSAHQAELLRD--GHTHF-----LVTGDVYRRDSIDSTHYPCFHQMEGFRVFT 208
Query: 410 ---VADRGL-----GLADLITVLDAFFKRL-GFDQLQFKPAYNPYTEPSMEIFAYHTGLA 258
+D G+ ADL L+ K L G ++++ Y P+T PS E+ Y
Sbjct: 209 PDEWSDSGMDGTAYAAADLKKTLEGLAKHLFGAVEMRWVDTYFPFTNPSFELEIYFQD-- 266
Query: 257 KWIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLERPTMIKYGLNNIR 114
W+E+ GV E+L G ++V A+GL LER M+ + + +IR
Sbjct: 267 DWLEVLGCGVTEQEILKNNGRIDNV-AWAFGLGLERLAMVLFDIPDIR 313
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 26.2 bits (55), Expect(2) = 0.50
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 582 AEEPAADAHDGGQRQDAVPAGAAD 511
A P A GG QDA AGAAD
Sbjct: 295 AHAPRPPARGGGGDQDAAVAGAAD 318
Score = 24.6 bits (51), Expect(2) = 0.50
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 615 GLQIRLEDRGGAEEPAADAH 556
G+ + L+ RGG P AD H
Sbjct: 244 GVDLELQARGGRRPPRADRH 263
>10_08_1025 -
22391267-22391767,22392641-22392736,22392838-22393106,
22393257-22393431,22393503-22393718,22393819-22393926,
22394020-22394544,22394631-22394819,22394924-22395041,
22395172-22395437,22395521-22395658
Length = 866
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +3
Query: 78 DHAQVDLGPDQVPDVVEPVLDHGGPLEGQAPRYHVHVLRQAHGQQHLRSEHP 233
DH G DQ PD +P GG + RYH H Q + L E P
Sbjct: 92 DHKPQHSGHDQPPDAAQPSGAAGG--NAKKKRYHRHTAHQIQQMEALFKECP 141
>03_01_0393 -
3062859-3062972,3063027-3063311,3063472-3063759,
3063844-3064161,3064232-3064415,3064504-3064659,
3066394-3066620,3066734-3066804,3067090-3067534
Length = 695
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 624 ISPLLCTFFTLSRYXWGTPWWQQ 692
IS + T T S+ WGT WWQQ
Sbjct: 491 ISDDMKTTITSSKREWGTSWWQQ 513
>04_04_1426 - 33471087-33471435,33471586-33471656
Length = 139
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -2
Query: 702 MSSPAATTEFPMXTWRG*RRCTVKVIWLPGLQIRLEDRGGAEEPAADAHDG---GQRQDA 532
MS PAA T FP+ + G R + P L+ RLE GA +A A G GQ D
Sbjct: 50 MSGPAARTNFPLSSSGGNARSCLS----PTLRARLEKCCGAGS-SAQAQQGAVAGQDNDD 104
Query: 531 VPAGAA 514
A AA
Sbjct: 105 AAAAAA 110
>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
Length = 516
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 600 LEDRGGAEEPAADAHDGG-QRQDAVPAGAA 514
+E GAE+ AADA GG R+ +VP G+A
Sbjct: 1 MEPDVGAEDAAADASTGGGSRRGSVPGGSA 30
>02_05_0139 - 26194892-26195230
Length = 112
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 630 VIWLPGLQIRLEDRGGAEEPAADAHDGGQRQDAVPAGAA 514
V+W P + + GG +A GGQ+Q+AV A AA
Sbjct: 4 VLWSPRCRDSVSVVGGGIGAGGEAGGGGQKQEAVAAMAA 42
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Frame = -3
Query: 563 THTTAVSARMLYRLAQQTEFTP------QKYFSIDKVFRNETLDATHLAEFHQVEGVVA 405
TH ++ R+ R+A + + + I K FRNE +D TH EF E +A
Sbjct: 312 THHNELNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMA 370
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 133 YLIMVGRSRDRPHAITFTSSGRPMGSSISGLNTPELPISIHLARPVWYANISMLGSV*GL 312
YL+ +SR P +TFT+ + + PE I++ A+ + Y + G + L
Sbjct: 307 YLVDTNKSRKDPTRVTFTNGSLNIFLQSTQAGKPEAIIALPEAKSIQYIRLEYDGHL-RL 365
Query: 313 YAGLNCSWSKPS-LLKK 360
Y + W+ S ++KK
Sbjct: 366 YEWSDEKWTMVSDVIKK 382
>04_03_0257 + 13572526-13572731,13573104-13573299
Length = 133
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 230 PPNYQSLSIWRDRCGMRIFPCWVRCR 307
P Y SL+ W DRCG F W R
Sbjct: 3 PTPYLSLAAWLDRCGCFPFRLWASQR 28
>04_03_0103 +
11288977-11290353,11291962-11292075,11294987-11295436,
11295813-11295910,11296023-11296206,11296979-11297068,
11301608-11301727,11301812-11302054,11302715-11302988,
11303237-11303357,11303591-11303849
Length = 1109
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 165 PVPRAAHHDQVRAQQHPGPGRAQGRPAHGLQ 73
P+P AA+ D P P AQ + HG Q
Sbjct: 276 PIPAAANTDYRHGHSAPTPAEAQAQGRHGYQ 306
>01_07_0343 - 42866940-42867656
Length = 238
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 165 PVPRAAHHDQVRAQQHPGP 109
PVP A+ HDQV + HP P
Sbjct: 195 PVPHASLHDQVPSPYHPHP 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,325,076
Number of Sequences: 37544
Number of extensions: 479510
Number of successful extensions: 1755
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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