Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_H08
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64856-2|AAB04986.2| 365|Caenorhabditis elegans Dpp/bmp-like pr... 29 3.7
AF074395-1|AAC26791.1| 365|Caenorhabditis elegans CET-1 protein. 29 3.7
AF004395-1|AAC27729.1| 365|Caenorhabditis elegans decapentapleg... 29 3.7
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 8.5
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 8.5
U41996-3|AAA83472.2| 362|Caenorhabditis elegans More of ms prot... 28 8.5
AL033510-10|CAA22063.2| 274|Caenorhabditis elegans Hypothetical... 28 8.5
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 8.5
AF013952-1|AAC47749.1| 362|Caenorhabditis elegans mom-2 protein. 28 8.5
>U64856-2|AAB04986.2| 365|Caenorhabditis elegans Dpp/bmp-like
protein 1 protein.
Length = 365
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 197 LSSNKLAVHSFNLVHVKHLFRLIIIT 274
+SS K VHSF L + HLF LI T
Sbjct: 11 ISSTKSLVHSFQLSAILHLFLLISFT 36
>AF074395-1|AAC26791.1| 365|Caenorhabditis elegans CET-1 protein.
Length = 365
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 197 LSSNKLAVHSFNLVHVKHLFRLIIIT 274
+SS K VHSF L + HLF LI T
Sbjct: 11 ISSTKSLVHSFQLSAILHLFLLISFT 36
>AF004395-1|AAC27729.1| 365|Caenorhabditis elegans decapentaplegic
protein homolog protein.
Length = 365
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 197 LSSNKLAVHSFNLVHVKHLFRLIIIT 274
+SS K VHSF L + HLF LI T
Sbjct: 11 ISSTKSLVHSFQLSAILHLFLLISFT 36
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 604 RGPDLRSLTRHTDDPNLTVLQ*YTGVTILCR--FLQTS--PLARXSVLYKSVDQCS 759
R D +L RHT DP+ + + G T CR + TS PL K D CS
Sbjct: 80 RAVDECALGRHTCDPHADCIDTHQGYTCKCRSGWSDTSLDPLRSPGRSCKKADMCS 135
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 604 RGPDLRSLTRHTDDPNLTVLQ*YTGVTILCR--FLQTS--PLARXSVLYKSVDQCS 759
R D +L RHT DP+ + + G T CR + TS PL K D CS
Sbjct: 664 RAVDECALGRHTCDPHADCIDTHQGYTCKCRSGWSDTSLDPLRSPGRSCKKADMCS 719
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 604 RGPDLRSLTRHTDDPNLTVLQ*YTGVTILCR--FLQTS--PLARXSVLYKSVDQCS 759
R D +L RHT DP+ + + G T CR + TS PL K D CS
Sbjct: 80 RAVDECALGRHTCDPHADCIDTHQGYTCKCRSGWSDTSLDPLRSPGRSCKKADMCS 135
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 604 RGPDLRSLTRHTDDPNLTVLQ*YTGVTILCR--FLQTS--PLARXSVLYKSVDQCS 759
R D +L RHT DP+ + + G T CR + TS PL K D CS
Sbjct: 664 RAVDECALGRHTCDPHADCIDTHQGYTCKCRSGWSDTSLDPLRSPGRSCKKADMCS 719
>U41996-3|AAA83472.2| 362|Caenorhabditis elegans More of ms protein
2 protein.
Length = 362
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 369 RLLVNIPKRYAKCTRASGTIQSKCCAWKSQDHSEPVAS 482
RLLVN + KC SG+ +K C WK + AS
Sbjct: 207 RLLVNAMNKECKCHGVSGSCVTKTC-WKVMPKFDEFAS 243
>AL033510-10|CAA22063.2| 274|Caenorhabditis elegans Hypothetical
protein Y40H7A.3 protein.
Length = 274
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 385 MFTNSRSL*VDLVPSFFIVLLYVCECIVIL 296
+FT R DL FF L++ C+C+VIL
Sbjct: 2 VFTRKRK---DLNTHFFCALVFFCQCLVIL 28
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 604 RGPDLRSLTRHTDDPNLTVLQ*YTGVTILCR--FLQTS--PLARXSVLYKSVDQCS 759
R D +L RHT DP+ + + G T CR + TS PL K D CS
Sbjct: 664 RAVDECALGRHTCDPHADCIDTHQGYTCKCRSGWSDTSLDPLRSPGRSCKKADMCS 719
>AF013952-1|AAC47749.1| 362|Caenorhabditis elegans mom-2 protein.
Length = 362
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 369 RLLVNIPKRYAKCTRASGTIQSKCCAWKSQDHSEPVAS 482
RLLVN + KC SG+ +K C WK + AS
Sbjct: 207 RLLVNAMNKECKCHGVSGSCVTKTC-WKVMPKFDEFAS 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,206,492
Number of Sequences: 27780
Number of extensions: 302098
Number of successful extensions: 686
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -