Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H07
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    36   0.005
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    35   0.015
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.18 
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    28   1.3  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   2.3  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   6.9  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   9.2  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   9.2  

>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = -1

Query: 739 TFDVNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKAAACGF 572
           TF  NI +  W  KA +  M S +   IV  +S+  +VG   L+DY S+K A   F
Sbjct: 149 TFKTNIFSFFWVTKAAISHMKSGSS--IVNCSSINAYVGRPDLLDYTSTKGAITAF 202


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = -1

Query: 748 IQXTFDVNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKAAACGFD 569
           +Q  F+ N+        A  P ++   + H+V IAS   +     +  Y SSKAA     
Sbjct: 130 LQKCFETNVIGQLAITSALFPLLLQDPNPHVVNIASSLAYFSAMGVGAYSSSKAALVSLH 189

Query: 568 EAXQ 557
           E  +
Sbjct: 190 ETLE 193


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 293 PDAVPVAPNARIETPSSAPKIDMKTDSRPMSLLPPAR 183
           P + P  P+    +P+SAP I  K    P SL PPA+
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQ 176



 Score = 28.7 bits (61), Expect = 0.98
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 296 VPDAVPVAPNARIETPSSAPKIDMKTDSRPMSLLPPARH 180
           +P AVP  P  ++  P  +      T SRP S  PPA H
Sbjct: 190 LPSAVPPMP-PKVPPPPLSQAPVANTSSRPSSFAPPAGH 227


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 269 NARIETPSSAPKIDMKTDSRPMSLLP 192
           N   E P+  P ID  TDS+P+S LP
Sbjct: 163 NIHPEAPTVLPPIDGFTDSQPISTLP 188


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 391 SLVRIASTTRSATSXRIQLWHEP*VNLFKHARRSNEVRTYQRSLHTLN 534
           +L+++ + + + TS RI L H       KHA+R+    +    LH  N
Sbjct: 223 NLLKLYTNSNTVTSSRISLKHTDPTKWQKHAKRTASSNSLTDLLHASN 270


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 58  GEWLPLPMDFSNTRCRAKPL 117
           GEW  +P    N +CRAK L
Sbjct: 478 GEWNTVPGHHKNPKCRAKKL 497


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 281 PVAPNARIETPSSAPKIDMKTDSRPMSLLPP 189
           P AP A+ +T + APK+  ++  +  +  PP
Sbjct: 149 PAAPAAQSKTETPAPKVTSESTKKETAAPPP 179


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 296 VPDAVPVAPNARIETPSSAPKIDMKTDSRPMSLLP 192
           VP A+P AP+ + ET  +  ++ +K  S   SL P
Sbjct: 269 VPAAIPDAPSVKTETSQNVSQLSVK--SAATSLAP 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,646
Number of Sequences: 5004
Number of extensions: 61445
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)