Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_H07
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1230 - 27204881-27205765 40 0.002
11_03_0015 + 8975199-8975277,8975574-8975607,8976744-8976957,897... 38 0.012
02_04_0234 + 21141704-21141940,21142408-21142477,21142646-211428... 37 0.021
02_03_0341 - 17948124-17948183,17948417-17948499,17948668-179487... 34 0.11
04_03_0648 - 18393142-18393174,18393259-18393341,18393569-183936... 32 0.44
02_05_0093 + 25753021-25753061,25753159-25753402,25753843-257539... 31 1.0
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 31 1.3
02_05_0977 - 33239887-33240566,33241010-33241985 30 1.8
11_06_0579 - 25181389-25182289,25182556-25182584 29 5.4
05_02_0120 - 6797954-6798970,6799466-6799951 28 7.2
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609... 28 9.5
>12_02_1230 - 27204881-27205765
Length = 294
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = -1
Query: 760 RPPSIQXTFDVNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKAAA 581
R +++ DVN V+A P M S+ G +V + S+ G YC+SKAA
Sbjct: 108 RGEAVRRAMDVNFLGQLRMVRAVAPHMASRRSGRVVNVGSVVGTAATPWAGPYCASKAAV 167
Query: 580 CGFDEAXQGRAR 545
+A + R
Sbjct: 168 HAATDALRVELR 179
>11_03_0015 +
8975199-8975277,8975574-8975607,8976744-8976957,
8977144-8977182,8977266-8977358,8977448-8977546,
8978163-8978264,8978301-8978378,8978696-8978779,
8979172-8979237,8979861-8979947
Length = 324
Score = 37.5 bits (83), Expect = 0.012
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = -1
Query: 748 IQXTFDVNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKAAACGF 572
++ TFDVN+ + P+M+ + GH V ++S AG V Y +SK A G+
Sbjct: 121 LKATFDVNVFGTITLTRLLAPSMMDRGMGHFVVMSSAAGKVPSPGQALYSASKHALNGY 179
>02_04_0234 +
21141704-21141940,21142408-21142477,21142646-21142839,
21142928-21143100,21144233-21144302
Length = 247
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -1
Query: 733 DVNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKAAACG 575
D NI ++ F+P MI + G IV ++S G A++ YC+SK A G
Sbjct: 128 DTNIKGTANVLRHFIPLMIEKKHGIIVNLSSGWGRSAAAEVAPYCASKWAIEG 180
>02_03_0341 -
17948124-17948183,17948417-17948499,17948668-17948761,
17948848-17948982,17949099-17949131,17949207-17949301,
17949394-17949439,17949517-17949597,17949874-17949927,
17950361-17950506,17952192-17952330
Length = 321
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -1
Query: 745 QXTFDVNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKAAACG 575
Q D+N+ +A M+ + G ++ IAS+ G G V+Y ++KAA G
Sbjct: 172 QDVVDLNLTGVFLCTQAATKVMMKKKKGRVINIASVVGLTGNLGQVNYAAAKAAVIG 228
>04_03_0648 -
18393142-18393174,18393259-18393341,18393569-18393662,
18393746-18393880,18394190-18394222,18394302-18394396,
18394494-18394539,18394639-18394719,18395464-18395517,
18395809-18395951,18397645-18397804
Length = 318
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 745 QXTFDVNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKAAACG 575
Q D+N+ +A M+ + G I+ IAS+ G VG +Y ++KA G
Sbjct: 178 QDVIDLNLTGVFLCTQAATKIMMKKKKGKIINIASVVGLVGNIGQANYSAAKAGVIG 234
>02_05_0093 +
25753021-25753061,25753159-25753402,25753843-25753905,
25753985-25754179,25754489-25754893
Length = 315
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 730 VNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHV 626
+N + T++A LP + S DG IVT++S+ G +
Sbjct: 146 INYHGNKKTIQALLPLLQSSPDGRIVTVSSVFGQL 180
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 163 IQTWRSCLAGGSSDIGLESVFMSIFGAEDGVSIRALGATGTASGTRPRISSDIHGQG 333
++TW C D+ ++++ G E VS ATGT + R R+ + G G
Sbjct: 1 METWLGCFYSKEKDLSDRGQWLNVGGEEPVVSYYFSPATGTGTRRRWRLEASAVGLG 57
>02_05_0977 - 33239887-33240566,33241010-33241985
Length = 551
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 122 VGSGLALHLVLLKSMGNGNHSPSGGPYACLPTWANK 15
+G+ LALH L + G+G+ SP+ A P+W K
Sbjct: 179 IGTALALH-AKLNNGGSGSSSPAPPSRAAFPSWVTK 213
>11_06_0579 - 25181389-25182289,25182556-25182584
Length = 309
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 395 WCVSRAQHDPPPRFEFSCGTNLELTSSNMPVDR 493
W H+ PP FEF+ GT+ E +S P R
Sbjct: 103 WVKRYYHHEAPPPFEFTAGTSDEEQASASPSAR 135
>05_02_0120 - 6797954-6798970,6799466-6799951
Length = 500
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +1
Query: 274 ATGTASGTRPRISSDIHGQGTIHLKGSNTRKKPGIRAKGSLVRIASTTRSATSXRIQLWH 453
+T T +G R + D H + + + R+ G R + + T + ++L H
Sbjct: 307 STSTWAGARLLTNPD-HLRAAVEEQARLLRRHGGDRVDHAALAAMDTLQRCVKETLRL-H 364
Query: 454 EP*VNLFKHARRSNEVR 504
P + L +HARRS VR
Sbjct: 365 PPALMLLRHARRSFVVR 381
>01_05_0106 +
18160018-18160243,18160423-18160470,18160816-18160974,
18162056-18162219,18162778-18162885,18163695-18163865,
18163945-18164478,18164574-18164648,18164724-18164852,
18164975-18165049,18165129-18165338,18165529-18165681,
18165763-18165986,18166305-18166422,18166518-18166656,
18166745-18166946,18166981-18167149,18167190-18167267,
18167268-18167408,18167717-18167819,18169024-18169324,
18169450-18169518,18169602-18169626,18170946-18170975
Length = 1216
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 AHLMASGYRCPWTSAIPGAEPSRCLPLSTLSNHNV 151
AH++AS RCP S + GA S L N+
Sbjct: 677 AHILASAQRCPPVSGVEGAIDSHLRVLGEQERWNI 711
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,973,001
Number of Sequences: 37544
Number of extensions: 470633
Number of successful extensions: 1281
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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