Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_H05
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069 32 0.65
05_03_0040 - 7646525-7647775 31 1.1
05_03_0039 - 7621613-7622695 31 1.5
10_08_0224 - 15993497-15994075 28 8.0
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537... 28 8.0
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 28 8.0
>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
Length = 228
Score = 31.9 bits (69), Expect = 0.65
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +2
Query: 455 TGTCFSMWTGYGLSTGMLTGNGTAXSTGYGMCFSXG*GAXXGTXXG 592
+GTC T G+ TGM TG T TG G + GA G G
Sbjct: 99 SGTCKYPATASGVGTGMGTGTSTGTGTGVGTGGTGTGGAGVGAGTG 144
>05_03_0040 - 7646525-7647775
Length = 416
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/51 (27%), Positives = 18/51 (35%)
Frame = -2
Query: 628 PXPXXXEXPXXXPXXXTXXRPLPXXEAHPVPSRXGRXVPS*HPRRQAIPSP 476
P P P P +P P + HP P + P HP + P P
Sbjct: 140 PEPKPEPKPEPKPEPKPEPKPKPEPKPHPEPKPDPKPEPKPHPEPEPKPEP 190
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/51 (27%), Positives = 17/51 (33%)
Frame = -2
Query: 628 PXPXXXEXPXXXPXXXTXXRPLPXXEAHPVPSRXGRXVPS*HPRRQAIPSP 476
P P P P P P E PVP + P P+ + P P
Sbjct: 54 PEPEPKPKPKPHPKPTPKPEPKPEPEPKPVPEPEPKPEPKPEPKPEPKPEP 104
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -3
Query: 591 PXXVPXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYP 481
P P P P K P P K P P P +PYP
Sbjct: 346 PEPKPEPKPQPEPKPEPKPEPKPEPKPEPKPEPKPYP 382
>05_03_0039 - 7621613-7622695
Length = 360
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/51 (27%), Positives = 18/51 (35%)
Frame = -2
Query: 628 PXPXXXEXPXXXPXXXTXXRPLPXXEAHPVPSRXGRXVPS*HPRRQAIPSP 476
P P P P P P + HP P + P HP+ + P P
Sbjct: 178 PEPKPEPKPKPVPHPEPKPEPKPEPKPHPEPKPEPKPEPKLHPKPEPKPHP 228
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 591 PXXVPXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYP 481
P P PYP K P PV K P P P +P P
Sbjct: 254 PEPKPEPKPYPKPKPEPKPVPKPKPIPHPGPKPKPKP 290
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 591 PXXVPXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYP 481
P P PYP K P P K P P + P +P P
Sbjct: 114 PEPKPEPKPYPEPKPKPKPEPKPEPKPEHKPEPKPEP 150
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/51 (27%), Positives = 17/51 (33%)
Frame = -2
Query: 628 PXPXXXEXPXXXPXXXTXXRPLPXXEAHPVPSRXGRXVPS*HPRRQAIPSP 476
P P P P P P + HP P + P HP + P P
Sbjct: 150 PEPKPYPKPKPEPKPGPKPEPKPEPKPHPEPKPEPKPKPVPHPEPKPEPKP 200
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -3
Query: 591 PXXVPXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYPVHIEKHVP 457
P P PYP K P P K P P P P P K VP
Sbjct: 146 PKPEPEPKPYPKPKPEPKPGPKPEPKPEPKPHPEPKPEPKPKPVP 190
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/51 (27%), Positives = 16/51 (31%)
Frame = -2
Query: 628 PXPXXXEXPXXXPXXXTXXRPLPXXEAHPVPSRXGRXVPS*HPRRQAIPSP 476
P P P P P P HP P + P HP + P P
Sbjct: 164 PGPKPEPKPEPKPHPEPKPEPKPKPVPHPEPKPEPKPEPKPHPEPKPEPKP 214
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/51 (25%), Positives = 18/51 (35%)
Frame = -2
Query: 628 PXPXXXEXPXXXPXXXTXXRPLPXXEAHPVPSRXGRXVPS*HPRRQAIPSP 476
P P P P +P P + HP+P + P P + P P
Sbjct: 278 PIPHPGPKPKPKPDPKLEPKPHPEPKPHPMPEPEPKPKPEPKPEPKPYPEP 328
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -3
Query: 591 PXXVPXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYPVHIEKHVP 457
P P P P K P P K P P P P PV K +P
Sbjct: 236 PEPKPEPKPEPEPKPEPKPEPKPEPKPYPKPKPEPKPVPKPKPIP 280
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -3
Query: 591 PXXVPXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYP 481
P P P P + PYP K P PV P P+P
Sbjct: 246 PEPKPEPKPEPKPEPKPYPKPKPEPKPVPKPKPIPHP 282
>10_08_0224 - 15993497-15994075
Length = 192
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 482 GYGLSTGMLTGNGTAXSTGYGMCFSXG*GAXXG 580
G G G G GT S+GYG F G GA G
Sbjct: 114 GGGGGNGGGQGGGTVGSSGYGSGFGTGSGASEG 146
>07_03_1164 +
24451808-24451868,24452690-24452923,24453735-24453768,
24454372-24454627
Length = 194
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 446 SMCTGTCFSMWTGYGLSTGMLTGNGTAXSTGYG 544
+M GT F+ TG G +TG G GT TG G
Sbjct: 126 TMTPGT-FTPGTGMGTTTGTGMGTGTTTGTGLG 157
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -1
Query: 572 PPLTPXR--STSRTQ*XRPXRSQLTSPSTGHTQ--STSRSTCLCTLRSPYRTQLRYRYQ 408
PPL P + + + RP S ++ S H++ S + +TC +L + R + R RYQ
Sbjct: 29 PPLLPDQIAAAAAAAAKRPAESSTSASSCFHSEVISATSTTCPTSLAAAQRPEKRPRYQ 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,603,157
Number of Sequences: 37544
Number of extensions: 155609
Number of successful extensions: 1034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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