Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_H03
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269 31 1.6
03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442... 30 2.8
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 29 3.7
07_03_1058 + 23631819-23631943,23632032-23632101,23632196-236333... 29 4.9
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 29 4.9
02_05_0040 + 25341418-25341810 29 4.9
12_02_0954 - 24757417-24758214 29 6.5
07_03_0658 - 20366559-20367562,20367745-20367937 29 6.5
06_03_0108 - 16732215-16732572,16732623-16732741,16733344-167333... 29 6.5
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 6.5
>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
Length = 309
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +2
Query: 32 WAPRRDTLERPRPAARAHGA 91
WA RR RPRPA RA GA
Sbjct: 102 WAERRAASRRPRPAPRAEGA 121
>03_01_0601 +
4423831-4424115,4424278-4424406,4424615-4424779,
4424925-4425230,4425387-4425448,4425776-4426145,
4426427-4426555,4427233-4427397,4427534-4427839,
4427928-4428068
Length = 685
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 592 RPXLESGGWIGPGVFYGGQNSVDG----VSRRSDGSL-NELCLYRPPTVHAYRPFA 744
+P L SGGWIG G GG +++ G V + G L LC HA R FA
Sbjct: 332 KPALTSGGWIGGG---GGDSTMGGGMRVVVTGATGYLGGRLCAALAAAGHAVRAFA 384
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 628 GVFYGGQNSVDGVSRRSDGSLNELCLYRPPTVHAYRPFASMGRSCYDILESPVDLV 795
G Y ++ VDG S R+ N P VH Y G++ D+ ++ L+
Sbjct: 719 GSVYDSESEVDGSSDRNAADSNTKDNQEDPLVHVYDASVDQGQTARDVEDNFASLI 774
>07_03_1058 +
23631819-23631943,23632032-23632101,23632196-23633368,
23633469-23634266
Length = 721
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 623 VPVSS-MEVKTAWMASPGDLTVH*TSSAYIDLPPYTPTAHLRQWG 754
VPVS TA+ SPG T TS PYT TAH + G
Sbjct: 529 VPVSGGAAAATAYTPSPGCTTAVPTSQPLSTSSPYTDTAHATRDG 573
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 529 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 419
Y+TSL + G ++ G+PR C AG D L W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320
>02_05_0040 + 25341418-25341810
Length = 130
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 106 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 204
RRAAP CG S+ S +RR AP S P
Sbjct: 74 RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106
>12_02_0954 - 24757417-24758214
Length = 265
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 50 TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 181
T +RPRP+ A A+ A+ A+G Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146
>07_03_0658 - 20366559-20367562,20367745-20367937
Length = 398
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +2
Query: 161 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADL 328
V+ G+ H + M L +HG V + L+P L FRQ + DL
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDL 306
>06_03_0108 -
16732215-16732572,16732623-16732741,16733344-16733393,
16734619-16734820
Length = 242
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 607 SGGWIGPGVFYGGQNSVDGVSRRSDGS 687
SGG GP V YGG+ GV R+ D S
Sbjct: 143 SGG-TGPAVDYGGRGDSGGVRRKEDSS 168
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 592 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 494
AG + +SH + P L +FR ++ L+K GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,886,221
Number of Sequences: 37544
Number of extensions: 548520
Number of successful extensions: 1314
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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