Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H02
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718     31   1.3  
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    30   2.4  
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82...    29   3.1  
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054...    29   5.4  
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810...    28   7.2  
03_02_0296 + 7191455-7191615,7192031-7192071,7192156-7192741,719...    28   9.5  

>05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718
          Length = 756

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 644 LRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTP-SKRKCLMKSKCLLTSPTRSTR 468
           L   +T P     R+P++SP+  +    T  ++ S TP SK+    K K L  SP  +  
Sbjct: 693 LEKEITMPRNRYWRTPVKSPVPAKKLEQTAQNKPSSTPKSKKVWKEKPKTLAPSPPETGG 752

Query: 467 K 465
           K
Sbjct: 753 K 753


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 641 RSPLTSPTRSK*RSPIRSPLKCQYQNLTKS-SRKSLTPSKRKCLMKSKCLLTSPTRSTRK 465
           RSP+ +P RS+ RSP R       ++++ S  R+S   SK +  ++ K +  SP RS  K
Sbjct: 446 RSPVRAPERSESRSPPRE------KSISMSPQRRSARRSKSRSPLREKSVSMSPRRSMSK 499


>10_01_0062 -
           818396-818538,819482-819693,819936-820420,820540-820696,
           820787-820924,821127-821703,821978-822018,822679-822809
          Length = 627

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 229 GCVLCINWLL*ALFKATFSLVYRSREFVTETRSCVVVICYYFVSFYMLVI 80
           GC+ C    L   F  T ++ Y S   +     CV+V+ +  V+F +LV+
Sbjct: 356 GCLFCGPLFLTFCFLNTVAIAYNSTAALPFGTICVIVLIWTLVTFPLLVL 405


>05_04_0028 +
           17302359-17302445,17303887-17303952,17305415-17305489,
           17305638-17305737,17305819-17305865,17305937-17305994,
           17306161-17306210,17306417-17306473,17306561-17306703,
           17306793-17306834,17307083-17307124,17308239-17308272,
           17308342-17308443,17310373-17310652,17311202-17311332,
           17311676-17311773,17312525-17312717
          Length = 534

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -1

Query: 662 SQCPTKLRSPLTSPTRS--K*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLT 489
           S  P K RS   S +RS  K RSP RSP         KS+ KS  P K + L +S     
Sbjct: 235 SHSPVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSASKS--PVKSRSLSRS----P 288

Query: 488 SPTRSTRKFKC 456
           SP R   +  C
Sbjct: 289 SPVRDINQKLC 299


>05_06_0276 +
           26878732-26879574,26879920-26880387,26880800-26881021,
           26881153-26881278,26881309-26881573,26881719-26881936
          Length = 713

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -1

Query: 638 SPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRK 519
           SP  SP RS  RSP R  +K Q ++  +S  +S +P++++
Sbjct: 67  SPRRSPVRSIGRSPQRDRVKEQVRSPKQSWSRSPSPARKR 106


>03_02_0296 +
           7191455-7191615,7192031-7192071,7192156-7192741,
           7193307-7193444,7193572-7193728,7193848-7194332,
           7194867-7195086
          Length = 595

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 229 GCVLCINWLL*ALFKATFSLVYRSREFVTETRSCVVVICYYFVSFYMLVI 80
           GC+ C    L   F  T ++ Y +   +     CV+V+ +  V+F +LV+
Sbjct: 369 GCLFCGPLFLTFCFLNTVAIAYSATAALPFGTICVIVLIWTLVTFPLLVL 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,204,566
Number of Sequences: 37544
Number of extensions: 251282
Number of successful extensions: 582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)