Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H02
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   2.8  
AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three par...    29   3.7  

>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 486 PYPVYKEVQVPLVKEVPYPVKYHVPI 409
           P PV + V VP+  +VP P++  VP+
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPV 174


>AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three
           paralog protein 3 protein.
          Length = 739

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -1

Query: 641 RSPLTSPTRSK*RSPIRSPLKCQYQNLTKS----SRKSLTPSKRKCLMKSKCLLTSPTRS 474
           R+P    T ++  SP+ SP+K Q Q   K+    S K  T +  +C  K +  + +P R 
Sbjct: 350 RAPAVPITPTEPASPVESPVKEQPQKAPKAQMRRSSKRTTKNNERCEQKEEEPIVNPKRR 409

Query: 473 TRK 465
           + +
Sbjct: 410 SAR 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,678,421
Number of Sequences: 27780
Number of extensions: 237728
Number of successful extensions: 749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)