Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H01
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    28   1.3  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   3.0  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   3.9  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   5.2  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    26   5.2  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   9.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   9.0  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   9.0  

>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -2

Query: 293 GDRRAGTLARATVEPPLACPIGDSRYKLAGL--VAWGIGCGQKD-VPAVYANVARMRSW 126
           G  +  + A   V+PP  CP+ +S  K AG+  V  G+   Q+  VP         R W
Sbjct: 107 GREKQNSEATPAVQPPATCPMSNSNQKPAGVSEVLTGVDSKQQSYVPEGCPVATPKRGW 165


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 577 SLKNDVALLRMHAPFNLAEHINMICLPDPGDSFDTSKN 464
           S  N   + R+HA + L +  ++ICL    +  +T KN
Sbjct: 845 SALNSAPIYRLHAAYKLVKAEDIICLSGLREIVETKKN 882


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 405  ITAYLPWRPKTSFPQPLATQFLLVSKLSPGSGRQIMLM 518
            I+ ++P+ PKTSFP     Q  L    S  +G ++  M
Sbjct: 1210 ISRWIPFIPKTSFPSLAEIQSRLTYVTSVATGEKVKSM 1247


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 449 AVGDAVLAGVEAIPRVREADHVDVLGEVEGRVHPQERHVVLKAFRVEIFVY 601
           +  +A    + AIP   E D  +   E +G++  +E+ V       EIF Y
Sbjct: 837 SASEAAAPDLAAIPIPNEVDDAEAADEKDGKLVEEEQRVTGDVVFSEIFSY 887


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -3

Query: 505 CLPDPGDSFD-TSKNCVA 455
           C+P+PG +FD   K+CV+
Sbjct: 49  CIPEPGSTFDPNEKSCVS 66


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 42  ICGRFYFGNVLNSVSGGSVTPRVHLPVDPRPHA 140
           I GRF  GN  N ++     PR+ +  DPR  A
Sbjct: 102 IAGRFTPGNFTNYITRTYREPRLIIVTDPRADA 134


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 297 RTRNCRADGTWSQVW 341
           RTR    DG W++VW
Sbjct: 649 RTRESEVDGEWTRVW 663


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 486  SPGSGRQIMLMCSARLKGACIRRSATSFLRLFVLKSSCMI 605
            S G    I+ +C   LKG+C R     +L+ F  ++  MI
Sbjct: 882  STGGYENILNICEKYLKGSCSRLEFRKYLQKFNNETCYMI 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,940
Number of Sequences: 5004
Number of extensions: 60343
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)