Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H01
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    27   0.19 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           26   0.34 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
 Frame = -3

Query: 616 VEEIIIHEDFNTKSLK----NDVALLRMHAPFNLAEHINMICLPDPG--DSFDTSKNCVA 455
           + ++IIH  ++         ND+ALL+        + +   CLP     DSF  S   V 
Sbjct: 236 INKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVL 295

Query: 454 NGWGKDVF 431
            GWG   F
Sbjct: 296 -GWGHTSF 302



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 285 EGRDTCQGDGGAP 247
           +G+D CQ D G P
Sbjct: 340 KGKDACQMDSGGP 352


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 566 VLKAFRVEIFVYDYFLDESHLVVXHF 643
           V   FR  + +YD+F D S  +  HF
Sbjct: 327 VSDVFRYGLLIYDFFKDSSFRIQHHF 352


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 539 RVHPQERHVVLKAFRVEIFVYDYFLDESHLVVXHFLD 649
           +VHP   H V K    E+   DY     HL   H LD
Sbjct: 273 KVHPLYGHGVCKWPGCEVICEDYQAFLKHLNTEHTLD 309


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -1

Query: 258 GGAPPGLSHR*QPLQVGRAGRLGHRVRAE---GRARGLRQRGPHE 133
           G + PG      P +   + R+  RV A    GR  GLR RGP +
Sbjct: 392 GSSTPGTGREHDPAKFPPSFRIS-RVAAYNTYGRNAGLRYRGPKQ 435


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 223  LSPMGQARGGSTVALASVPALLSPGAHETVVQTEP 327
            L   G A     +A  ++ +  SPG  +  +QT+P
Sbjct: 1265 LKTTGAAVYARVIAPTTITSSQSPGNQQQTIQTQP 1299


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 216 QVGRAGRLGHRVRA 175
           ++GR GR+G+R RA
Sbjct: 538 RIGRTGRVGNRGRA 551


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 488 PRVREADHVDVLG 526
           P V E+D VDV+G
Sbjct: 200 PSVSESDEVDVIG 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,917
Number of Sequences: 438
Number of extensions: 5112
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)