Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_G22
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    27   4.4  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   7.6  

>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 376 FTLCYVI*NSTNHSAVWFIICVY*LGFVTCSRSFEVCP 263
           + +CY+I N+ N   +    C    G  TC R  E  P
Sbjct: 174 YGMCYIIRNNANRILLESCYCENSTGMSTCPRILEFMP 211


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 162 YLQPFYTNWCKFTMSFFTNIDEAD*LKIIGIRK 64
           +L  F TNWC  +MS+     +A  L+++G+ K
Sbjct: 235 FLAFFPTNWCFSSMSYMVQSKKAA-LRLLGMTK 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,130
Number of Sequences: 5004
Number of extensions: 53795
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)