Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_G19
         (1274 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   8.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   8.5  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 12/37 (32%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
 Frame = +3

Query: 228 PPXXXPXXPXPPPXXXXXXXXPXPXXPP---PPXXPP 329
           P    P    PP         P P  PP   PP  PP
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 298 PXXPPXPXPPP 330
           P  PP P PPP
Sbjct: 95  PTTPPTPSPPP 105


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/33 (30%), Positives = 10/33 (30%)
 Frame = +3

Query: 228 PPXXXPXXPXPPPXXXXXXXXPXPXXPPPPXXP 326
           P    P    PP         P P  PP P  P
Sbjct: 155 PSIIDPGPALPPAGFLCNNYLPLPQVPPLPLPP 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,978
Number of Sequences: 336
Number of extensions: 2876
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 37507765
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)